rs1415571

Homo sapiens
G>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0339 (10138/29878,GnomAD)
T=0320 (9342/29118,TOPMED)
T=0271 (1357/5008,1000G)
T=0343 (1322/3854,ALSPAC)
T=0327 (1211/3708,TWINSUK)
chr15:79527529 (GRCh38.p7) (15q25.1)
AD
GWASdb2
1   publication(s)
See rs on genome
10 Enhancers around
1 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.79527529G>T
GRCh37.p13 chr 15NC_000015.9:g.79819871G>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.661T=0.339
1000GenomesAmericanSub694G=0.660T=0.340
1000GenomesEast AsianSub1008G=0.875T=0.125
1000GenomesEuropeSub1006G=0.660T=0.340
1000GenomesGlobalStudy-wide5008G=0.729T=0.271
1000GenomesSouth AsianSub978G=0.790T=0.210
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.657T=0.343
The Genome Aggregation DatabaseAfricanSub8684G=0.657T=0.343
The Genome Aggregation DatabaseAmericanSub836G=0.710T=0.290
The Genome Aggregation DatabaseEast AsianSub1614G=0.856T=0.144
The Genome Aggregation DatabaseEuropeSub18442G=0.642T=0.357
The Genome Aggregation DatabaseGlobalStudy-wide29878G=0.660T=0.339
The Genome Aggregation DatabaseOtherSub302G=0.710T=0.290
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.679T=0.320
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.673T=0.327
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs14155710.000811alcohol dependence20201924

eQTL of rs1415571 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1415571 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr157980580679806045E070-13826
chr157980617079806224E070-13647
chr157980642879806536E070-13335
chr157980533879805712E081-14159
chr157980580679806045E081-13826
chr157980617079806224E081-13647
chr157980642879806536E081-13335
chr157980580679806045E082-13826
chr157980617079806224E082-13647
chr157980642879806536E082-13335



Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr157985478679854940E06834915