rs1416095

Homo sapiens
A>G
LOC105378731 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A==0492 (14709/29876,GnomAD)
A==0419 (12225/29118,TOPMED)
A==0458 (2294/5008,1000G)
G=0361 (1393/3854,ALSPAC)
G=0358 (1327/3708,TWINSUK)
chr1:53343021 (GRCh38.p7) (1p32.3)
AD
GWASdb2
1   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.53343021A>G
GRCh37.p13 chr 1NC_000001.10:g.53808693A>G

Gene: LOC105378731, uncharacterized LOC105378731(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC105378731 transcriptXR_001738057.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.068G=0.932
1000GenomesAmericanSub694A=0.700G=0.300
1000GenomesEast AsianSub1008A=0.569G=0.431
1000GenomesEuropeSub1006A=0.608G=0.392
1000GenomesGlobalStudy-wide5008A=0.458G=0.542
1000GenomesSouth AsianSub978A=0.540G=0.460
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.639G=0.361
The Genome Aggregation DatabaseAfricanSub8690A=0.153G=0.847
The Genome Aggregation DatabaseAmericanSub834A=0.720G=0.280
The Genome Aggregation DatabaseEast AsianSub1616A=0.616G=0.384
The Genome Aggregation DatabaseEuropeSub18434A=0.629G=0.370
The Genome Aggregation DatabaseGlobalStudy-wide29876A=0.492G=0.507
The Genome Aggregation DatabaseOtherSub302A=0.600G=0.400
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.419G=0.580
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.642G=0.358
PMID Title Author Journal
22096494A novel, functional and replicable risk gene region for alcohol dependence identified by genome-wide association study.Zuo LPLoS One

P-Value

SNP ID p-value Traits Study
rs14160951.2E-05alcohol dependence22096494

eQTL of rs1416095 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1416095 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr15375872953758809E067-49884
chr15375890953759118E067-49575
chr15375969153760121E067-48572
chr15376012953760190E067-48503
chr15376029053760522E067-48171
chr15376109553761215E067-47478
chr15376141753761498E067-47195
chr15376155253761666E067-47027
chr15376939153770070E067-38623
chr15377012553770185E067-38508
chr15377153253771584E067-37109
chr15377197753772076E067-36617
chr15377420153774540E067-34153
chr15377666853777368E067-31325
chr15377739553777900E067-30793
chr15378232053782430E067-26263
chr15378246553783410E067-25283
chr15378394653784088E067-24605
chr15378433453784537E067-24156
chr15379055553790651E067-18042
chr15375872953758809E068-49884
chr15375890953759118E068-49575
chr15375969153760121E068-48572
chr15376012953760190E068-48503
chr15376029053760522E068-48171
chr15376168253761801E068-46892
chr15376188353761933E068-46760
chr15376197353762028E068-46665
chr15376204853762430E068-46263
chr15376903953769330E068-39363
chr15376939153770070E068-38623
chr15377012553770185E068-38508
chr15377153253771584E068-37109
chr15377197753772076E068-36617
chr15378143753781538E068-27155
chr15378165953782099E068-26594
chr15378210953782261E068-26432
chr15378232053782430E068-26263
chr15378246553783410E068-25283
chr15378884953788940E068-19753
chr15379055553790651E068-18042
chr15375872953758809E069-49884
chr15375890953759118E069-49575
chr15375969153760121E069-48572
chr15376012953760190E069-48503
chr15376029053760522E069-48171
chr15376109553761215E069-47478
chr15376141753761498E069-47195
chr15376155253761666E069-47027
chr15376168253761801E069-46892
chr15376188353761933E069-46760
chr15376197353762028E069-46665
chr15376204853762430E069-46263
chr15376400953764055E069-44638
chr15376409953764272E069-44421
chr15376443953764558E069-44135
chr15376484953764899E069-43794
chr15376507053765230E069-43463
chr15376903953769330E069-39363
chr15376939153770070E069-38623
chr15377012553770185E069-38508
chr15377153253771584E069-37109
chr15377305853773164E069-35529
chr15377323453773442E069-35251
chr15377666853777368E069-31325
chr15377739553777900E069-30793
chr15378165953782099E069-26594
chr15378210953782261E069-26432
chr15378232053782430E069-26263
chr15378394653784088E069-24605
chr15378712353787310E069-21383
chr15378737153787596E069-21097
chr15379055553790651E069-18042
chr15375872953758809E070-49884
chr15375890953759118E070-49575
chr15375969153760121E070-48572
chr15376012953760190E070-48503
chr15376029053760522E070-48171
chr15376109553761215E070-47478
chr15376141753761498E070-47195
chr15376155253761666E070-47027
chr15376168253761801E070-46892
chr15376188353761933E070-46760
chr15376197353762028E070-46665
chr15376204853762430E070-46263
chr15376292553763092E070-45601
chr15376400953764055E070-44638
chr15376409953764272E070-44421
chr15376443953764558E070-44135
chr15376484953764899E070-43794
chr15376507053765230E070-43463
chr15376903953769330E070-39363
chr15377153253771584E070-37109
chr15377197753772076E070-36617
chr15377305853773164E070-35529
chr15377323453773442E070-35251
chr15377420153774540E070-34153
chr15377610753776169E070-32524
chr15377657853776628E070-32065
chr15377666853777368E070-31325
chr15377739553777900E070-30793
chr15377852053778620E070-30073
chr15377925953779504E070-29189
chr15378080453780991E070-27702
chr15378108453781144E070-27549
chr15378143753781538E070-27155
chr15378165953782099E070-26594
chr15378210953782261E070-26432
chr15378232053782430E070-26263
chr15378246553783410E070-25283
chr15378394653784088E070-24605
chr15378712353787310E070-21383
chr15378737153787596E070-21097
chr15378776953787889E070-20804
chr15378795753788268E070-20425
chr15378863353788696E070-19997
chr15378884953788940E070-19753
chr15383406753834568E07025374
chr15384149653841635E07032803
chr15384171053842171E07033017
chr15384252853842578E07033835
chr15384262753842799E07033934
chr15385587453855996E07047181
chr15385602553856280E07047332
chr15385632953856614E07047636
chr15385814153858365E07049448
chr15385837753858457E07049684
chr15375872953758809E071-49884
chr15375890953759118E071-49575
chr15375969153760121E071-48572
chr15376012953760190E071-48503
chr15376029053760522E071-48171
chr15376109553761215E071-47478
chr15376141753761498E071-47195
chr15376155253761666E071-47027
chr15376168253761801E071-46892
chr15376188353761933E071-46760
chr15376197353762028E071-46665
chr15376204853762430E071-46263
chr15376903953769330E071-39363
chr15376939153770070E071-38623
chr15377012553770185E071-38508
chr15377197753772076E071-36617
chr15377666853777368E071-31325
chr15377739553777900E071-30793
chr15378080453780991E071-27702
chr15378108453781144E071-27549
chr15378143753781538E071-27155
chr15378165953782099E071-26594
chr15378210953782261E071-26432
chr15378232053782430E071-26263
chr15378246553783410E071-25283
chr15383406753834568E07125374
chr15375872953758809E072-49884
chr15375890953759118E072-49575
chr15375969153760121E072-48572
chr15376012953760190E072-48503
chr15376029053760522E072-48171
chr15376109553761215E072-47478
chr15376141753761498E072-47195
chr15376155253761666E072-47027
chr15376168253761801E072-46892
chr15376188353761933E072-46760
chr15376197353762028E072-46665
chr15376204853762430E072-46263
chr15376292553763092E072-45601
chr15376400953764055E072-44638
chr15376409953764272E072-44421
chr15376443953764558E072-44135
chr15376484953764899E072-43794
chr15376903953769330E072-39363
chr15376939153770070E072-38623
chr15377012553770185E072-38508
chr15377153253771584E072-37109
chr15377323453773442E072-35251
chr15377739553777900E072-30793
chr15377852053778620E072-30073
chr15378246553783410E072-25283
chr15379055553790651E072-18042
chr15375872953758809E073-49884
chr15375890953759118E073-49575
chr15375969153760121E073-48572
chr15376012953760190E073-48503
chr15376029053760522E073-48171
chr15376109553761215E073-47478
chr15376141753761498E073-47195
chr15376155253761666E073-47027
chr15376168253761801E073-46892
chr15376188353761933E073-46760
chr15376197353762028E073-46665
chr15376903953769330E073-39363
chr15376939153770070E073-38623
chr15377012553770185E073-38508
chr15377153253771584E073-37109
chr15377197753772076E073-36617
chr15377305853773164E073-35529
chr15377739553777900E073-30793
chr15378165953782099E073-26594
chr15378210953782261E073-26432
chr15378232053782430E073-26263
chr15378246553783410E073-25283
chr15378712353787310E073-21383
chr15378737153787596E073-21097
chr15378776953787889E073-20804
chr15378795753788268E073-20425
chr15378863353788696E073-19997
chr15378884953788940E073-19753
chr15379055553790651E073-18042
chr15383406753834568E07325374
chr15384149653841635E07332803
chr15384171053842171E07333017
chr15385555353855603E07346860
chr15385587453855996E07347181
chr15375872953758809E074-49884
chr15375890953759118E074-49575
chr15376012953760190E074-48503
chr15376109553761215E074-47478
chr15376400953764055E074-44638
chr15376409953764272E074-44421
chr15376443953764558E074-44135
chr15376939153770070E074-38623
chr15377012553770185E074-38508
chr15377197753772076E074-36617
chr15377739553777900E074-30793
chr15379055553790651E074-18042
chr15383406753834568E07425374
chr15375872953758809E081-49884
chr15375890953759118E081-49575
chr15375969153760121E081-48572
chr15376012953760190E081-48503
chr15376029053760522E081-48171
chr15376109553761215E081-47478
chr15376141753761498E081-47195
chr15376155253761666E081-47027
chr15376168253761801E081-46892
chr15376188353761933E081-46760
chr15376197353762028E081-46665
chr15376204853762430E081-46263
chr15376292553763092E081-45601
chr15376400953764055E081-44638
chr15376409953764272E081-44421
chr15376443953764558E081-44135
chr15376903953769330E081-39363
chr15376939153770070E081-38623
chr15377012553770185E081-38508
chr15377153253771584E081-37109
chr15377197753772076E081-36617
chr15377305853773164E081-35529
chr15377323453773442E081-35251
chr15377420153774540E081-34153
chr15377610753776169E081-32524
chr15377657853776628E081-32065
chr15377666853777368E081-31325
chr15377739553777900E081-30793
chr15377852053778620E081-30073
chr15377925953779504E081-29189
chr15378080453780991E081-27702
chr15378108453781144E081-27549
chr15378143753781538E081-27155
chr15378165953782099E081-26594
chr15378210953782261E081-26432
chr15378232053782430E081-26263
chr15378246553783410E081-25283
chr15378394653784088E081-24605
chr15378433453784537E081-24156
chr15378712353787310E081-21383
chr15378737153787596E081-21097
chr15378776953787889E081-20804
chr15378795753788268E081-20425
chr15378863353788696E081-19997
chr15378884953788940E081-19753
chr15379017953790265E081-18428
chr15379055553790651E081-18042
chr15383406753834568E08125374
chr15383468753834976E08125994
chr15384111053841226E08132417
chr15384123053841319E08132537
chr15384149653841635E08132803
chr15384171053842171E08133017
chr15384252853842578E08133835
chr15384262753842799E08133934
chr15385482453855222E08146131
chr15385527353855375E08146580
chr15385555353855603E08146860
chr15385587453855996E08147181
chr15385602553856280E08147332
chr15385632953856614E08147636
chr15385667053856750E08147977
chr15385765653857946E08148963
chr15385814153858365E08149448
chr15385837753858457E08149684
chr15375872953758809E082-49884
chr15375890953759118E082-49575
chr15375969153760121E082-48572
chr15376012953760190E082-48503
chr15376029053760522E082-48171
chr15376109553761215E082-47478
chr15376141753761498E082-47195
chr15376155253761666E082-47027
chr15376168253761801E082-46892
chr15376197353762028E082-46665
chr15376204853762430E082-46263
chr15376292553763092E082-45601
chr15376400953764055E082-44638
chr15376409953764272E082-44421
chr15376443953764558E082-44135
chr15376484953764899E082-43794
chr15376507053765230E082-43463
chr15376566553765784E082-42909
chr15377012553770185E082-38508
chr15377153253771584E082-37109
chr15377197753772076E082-36617
chr15377420153774540E082-34153
chr15377610753776169E082-32524
chr15377852053778620E082-30073
chr15377925953779504E082-29189
chr15378080453780991E082-27702
chr15378108453781144E082-27549
chr15378143753781538E082-27155
chr15378394653784088E082-24605
chr15378433453784537E082-24156
chr15384149653841635E08232803
chr15384171053842171E08233017
chr15385602553856280E08247332
chr15385632953856614E08247636










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr15379083753793584E067-15109
chr15379366553794164E067-14529
chr15379083753793584E068-15109
chr15379366553794164E068-14529
chr15379083753793584E069-15109
chr15379366553794164E069-14529
chr15379083753793584E070-15109
chr15379366553794164E070-14529
chr15379083753793584E071-15109
chr15379366553794164E071-14529
chr15379083753793584E072-15109
chr15379366553794164E072-14529
chr15379083753793584E073-15109
chr15379366553794164E073-14529
chr15379083753793584E074-15109
chr15379366553794164E074-14529
chr15379083753793584E082-15109
chr15379366553794164E082-14529