SNP Detail Info-rs1423071

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0158 (4748/29908,GnomAD)
A=0196 (5706/29118,TOPMED)
A=0173 (864/5008,1000G)
A=0086 (332/3854,ALSPAC)
A=0080 (297/3708,TWINSUK)

Position: chr19:55782335 (GRCh38.p7) (19q13.42)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 19	NC_000019.10:g.55782335G>A
GRCh37.p13 chr 19	NC_000019.9:g.56293701G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.618	A=0.382
1000Genomes	American	Sub	694	G=0.860	A=0.140
1000Genomes	East Asian	Sub	1008	G=0.869	A=0.131
1000Genomes	Europe	Sub	1006	G=0.920	A=0.080
1000Genomes	Global	Study-wide	5008	G=0.827	A=0.173
1000Genomes	South Asian	Sub	978	G=0.950	A=0.050
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.914	A=0.086
The Genome Aggregation Database	African	Sub	8692	G=0.674	A=0.326
The Genome Aggregation Database	American	Sub	838	G=0.860	A=0.140
The Genome Aggregation Database	East Asian	Sub	1612	G=0.904	A=0.096
The Genome Aggregation Database	Europe	Sub	18464	G=0.911	A=0.088
The Genome Aggregation Database	Global	Study-wide	29908	G=0.841	A=0.158
The Genome Aggregation Database	Other	Sub	302	G=0.940	A=0.060
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.804	A=0.196
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.920	A=0.080

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs1423071	0.00000465	alcoholism	pha002891
rs1423071	0.00000465	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs1423071