SNP Detail Info-rs1438339

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.29440555C>T
GRCh37.p13 chr 3	NC_000003.11:g.29482046C>T

Molecule type	Change	Amino acid[Codon]	SO Term
RBMS3 transcript variant 3	NM_001003792.2:c.	N/A	Intron Variant
RBMS3 transcript variant 1	NM_001003793.2:c.	N/A	Intron Variant
RBMS3 transcript variant 5	NM_001177711.1:c.	N/A	Intron Variant
RBMS3 transcript variant 4	NM_001177712.1:c.	N/A	Intron Variant
RBMS3 transcript variant 2	NM_014483.3:c.	N/A	Intron Variant
RBMS3 transcript variant X1	XM_005265060.2:c.	N/A	Intron Variant
RBMS3 transcript variant X5	XM_005265061.2:c.	N/A	Intron Variant
RBMS3 transcript variant X6	XM_005265062.1:c.	N/A	Intron Variant
RBMS3 transcript variant X3	XM_017006178.1:c.	N/A	Intron Variant
RBMS3 transcript variant X4	XM_017006179.1:c.	N/A	Intron Variant
RBMS3 transcript variant X7	XM_017006180.1:c.	N/A	Intron Variant
RBMS3 transcript variant X8	XM_017006181.1:c.	N/A	Intron Variant
RBMS3 transcript variant X9	XM_017006182.1:c.	N/A	Intron Variant
RBMS3 transcript variant X9	XM_005265063.1:c.	N/A	Genic Upstream Transcript Variant
RBMS3 transcript variant X10	XM_005265065.4:c.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.373	T=0.627
1000Genomes	American	Sub	694	C=0.530	T=0.470
1000Genomes	East Asian	Sub	1008	C=0.678	T=0.322
1000Genomes	Europe	Sub	1006	C=0.813	T=0.187
1000Genomes	Global	Study-wide	5008	C=0.615	T=0.385
1000Genomes	South Asian	Sub	978	C=0.730	T=0.270
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.809	T=0.191
The Genome Aggregation Database	African	Sub	8708	C=0.425	T=0.575
The Genome Aggregation Database	American	Sub	836	C=0.630	T=0.370
The Genome Aggregation Database	East Asian	Sub	1612	C=0.697	T=0.303
The Genome Aggregation Database	Europe	Sub	18484	C=0.842	T=0.157
The Genome Aggregation Database	Global	Study-wide	29942	C=0.706	T=0.293
The Genome Aggregation Database	Other	Sub	302	C=0.760	T=0.240
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.613	T=0.387
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.815	T=0.185

PMID	Title	Author	Journal
24277619	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.	Quillen EE	Am J Med Genet B Neuropsychiatr Genet

SNP ID	p-value	Traits	Study
rs1438339	0.000556	alcohol dependence	24277619

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr3	29494547	29496462	E067	12501
chr3	29494547	29496462	E069	12501
chr3	29451802	29452066	E070	-29980
chr3	29470818	29470944	E070	-11102
chr3	29494547	29496462	E070	12501
chr3	29516289	29516359	E070	34243
chr3	29516494	29516594	E070	34448
chr3	29516959	29517118	E070	34913
chr3	29517409	29517655	E070	35363
chr3	29489724	29489918	E071	7678
chr3	29489724	29489918	E072	7678
chr3	29494547	29496462	E072	12501
chr3	29496547	29496650	E072	14501
chr3	29494547	29496462	E073	12501
chr3	29489724	29489918	E074	7678
chr3	29507719	29508239	E074	25673
chr3	29467946	29468023	E081	-14023
chr3	29468176	29468229	E081	-13817
chr3	29468296	29468401	E081	-13645
chr3	29469194	29469749	E081	-12297
chr3	29470818	29470944	E081	-11102
chr3	29494547	29496462	E082	12501

rs1438339

Chromosome	Start	End	Region
chr3	29481792	29482729	E067
chr3	29481792	29482729	E068
chr3	29481792	29482729	E069
chr3	29481792	29482729	E071
chr3	29481792	29482729	E074