SNP Detail Info-rs1441231

Organism: Homo sapiens

Alleles: T>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C=0129 (3871/29888,GnomAD)
C=0132 (3846/29116,TOPMED)
C=0133 (665/5008,1000G)

Position: chr2:41278333 (GRCh38.p7) (2p22.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 2 Enhancers around

Promoter: 1 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 2	NC_000002.12:g.41278333T>C
GRCh37.p13 chr 2	NC_000002.11:g.41505473T>C

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.818	C=0.182
1000Genomes	American	Sub	694	T=0.920	C=0.080
1000Genomes	East Asian	Sub	1008	T=0.783	C=0.217
1000Genomes	Europe	Sub	1006	T=0.913	C=0.087
1000Genomes	Global	Study-wide	5008	T=0.867	C=0.133
1000Genomes	South Asian	Sub	978	T=0.940	C=0.060
The Genome Aggregation Database	African	Sub	8712	T=0.834	C=0.166
The Genome Aggregation Database	American	Sub	834	T=0.910	C=0.090
The Genome Aggregation Database	East Asian	Sub	1602	T=0.770	C=0.230
The Genome Aggregation Database	Europe	Sub	18438	T=0.894	C=0.105
The Genome Aggregation Database	Global	Study-wide	29888	T=0.870	C=0.129
The Genome Aggregation Database	Other	Sub	302	T=0.900	C=0.100
Trans-Omics for Precision Medicine	Global	Study-wide	29116	T=0.867	C=0.132

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs1441231	0.00082	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr2	41553919	41554001	E081	48446
chr2	41554041	41554420	E082	48568

rs1441231