Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 3 | NC_000003.12:g.133569662C>T |
GRCh37.p13 chr 3 | NC_000003.11:g.133288506C>T |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.665 | T=0.335 |
1000Genomes | American | Sub | 694 | C=0.300 | T=0.700 |
1000Genomes | East Asian | Sub | 1008 | C=0.130 | T=0.870 |
1000Genomes | Europe | Sub | 1006 | C=0.334 | T=0.666 |
1000Genomes | Global | Study-wide | 5008 | C=0.342 | T=0.658 |
1000Genomes | South Asian | Sub | 978 | C=0.160 | T=0.840 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.357 | T=0.643 |
The Genome Aggregation Database | African | Sub | 8708 | C=0.621 | T=0.379 |
The Genome Aggregation Database | American | Sub | 838 | C=0.280 | T=0.720 |
The Genome Aggregation Database | East Asian | Sub | 1620 | C=0.119 | T=0.881 |
The Genome Aggregation Database | Europe | Sub | 18490 | C=0.365 | T=0.634 |
The Genome Aggregation Database | Global | Study-wide | 29958 | C=0.424 | T=0.576 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.360 | T=0.640 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.460 | T=0.539 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.376 | T=0.624 |
PMID | Title | Author | Journal |
---|---|---|---|
21665994 | Genome-wide association study identifies two loci strongly affecting transferrin glycosylation. | Kutalik Z | Hum Mol Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs1444600 | 6.62E-08 | alcohol consumption | 21665994 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr3 | 133254911 | 133255817 | E067 | -32689 |
chr3 | 133297382 | 133297726 | E067 | 8876 |
chr3 | 133254911 | 133255817 | E068 | -32689 |
chr3 | 133254911 | 133255817 | E069 | -32689 |
chr3 | 133296654 | 133296726 | E069 | 8148 |
chr3 | 133296755 | 133296862 | E069 | 8249 |
chr3 | 133297034 | 133297084 | E069 | 8528 |
chr3 | 133297382 | 133297726 | E069 | 8876 |
chr3 | 133254911 | 133255817 | E070 | -32689 |
chr3 | 133297382 | 133297726 | E070 | 8876 |
chr3 | 133297382 | 133297726 | E071 | 8876 |
chr3 | 133289963 | 133290140 | E072 | 1457 |
chr3 | 133297382 | 133297726 | E072 | 8876 |
chr3 | 133296654 | 133296726 | E073 | 8148 |
chr3 | 133296755 | 133296862 | E073 | 8249 |
chr3 | 133297034 | 133297084 | E073 | 8528 |
chr3 | 133297382 | 133297726 | E073 | 8876 |
chr3 | 133314061 | 133314138 | E073 | 25555 |
chr3 | 133314324 | 133314490 | E073 | 25818 |
chr3 | 133314501 | 133314644 | E073 | 25995 |
chr3 | 133254911 | 133255817 | E074 | -32689 |
chr3 | 133296654 | 133296726 | E074 | 8148 |
chr3 | 133296755 | 133296862 | E074 | 8249 |
chr3 | 133297034 | 133297084 | E074 | 8528 |
chr3 | 133297382 | 133297726 | E074 | 8876 |
chr3 | 133296755 | 133296862 | E081 | 8249 |
chr3 | 133297034 | 133297084 | E081 | 8528 |
chr3 | 133297382 | 133297726 | E081 | 8876 |
chr3 | 133297382 | 133297726 | E082 | 8876 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr3 | 133291220 | 133294288 | E067 | 2714 |
chr3 | 133291220 | 133294288 | E068 | 2714 |
chr3 | 133291220 | 133294288 | E069 | 2714 |
chr3 | 133291220 | 133294288 | E070 | 2714 |
chr3 | 133294433 | 133294485 | E070 | 5927 |
chr3 | 133291220 | 133294288 | E071 | 2714 |
chr3 | 133294433 | 133294485 | E071 | 5927 |
chr3 | 133291220 | 133294288 | E072 | 2714 |
chr3 | 133291220 | 133294288 | E073 | 2714 |
chr3 | 133291220 | 133294288 | E074 | 2714 |
chr3 | 133291220 | 133294288 | E082 | 2714 |
chr3 | 133294433 | 133294485 | E082 | 5927 |