rs1461155

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0081 (2446/29984,GnomAD)
C=0058 (1696/29118,TOPMED)
C=0155 (774/5008,1000G)
C=0058 (223/3854,ALSPAC)
C=0052 (192/3708,TWINSUK)
chr3:98529888 (GRCh38.p7) (3q11.2)
AD
GWASdb2
1   publication(s)
See rs on genome
72 Enhancers around
30 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.98529888T>C
GRCh37.p13 chr 3NC_000003.11:g.98248732T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.971C=0.029
1000GenomesAmericanSub694T=0.820C=0.180
1000GenomesEast AsianSub1008T=0.664C=0.336
1000GenomesEuropeSub1006T=0.936C=0.064
1000GenomesGlobalStudy-wide5008T=0.845C=0.155
1000GenomesSouth AsianSub978T=0.790C=0.210
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.942C=0.058
The Genome Aggregation DatabaseAfricanSub8732T=0.971C=0.029
The Genome Aggregation DatabaseAmericanSub838T=0.780C=0.220
The Genome Aggregation DatabaseEast AsianSub1616T=0.603C=0.397
The Genome Aggregation DatabaseEuropeSub18496T=0.927C=0.072
The Genome Aggregation DatabaseGlobalStudy-wide29984T=0.918C=0.081
The Genome Aggregation DatabaseOtherSub302T=0.910C=0.090
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.941C=0.058
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.948C=0.052
PMID Title Author Journal
24277619ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.Quillen EEAm J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs14611550.0007alcohol consumption (maxi-drinks)24277619

eQTL of rs1461155 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1461155 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr39823208298232330E067-16402
chr39823365598233724E067-15008
chr39823551198235580E067-13152
chr39823773498237856E067-10876
chr39823816498238229E067-10503
chr39829197898292571E06743246
chr39823208298232330E068-16402
chr39823391498233964E068-14768
chr39823551198235580E068-13152
chr39823816498238229E068-10503
chr39824252598242593E068-6139
chr39827212598272350E06823393
chr39829295498293006E06844222
chr39829305998293254E06844327
chr39823095398231017E069-17715
chr39823365598233724E069-15008
chr39823551198235580E069-13152
chr39823773498237856E069-10876
chr39827212598272350E06923393
chr39827321798273263E06924485
chr39829197898292571E06943246
chr39829275798292811E06944025
chr39829295498293006E06944222
chr39829305998293254E06944327
chr39823816498238229E070-10503
chr39823827798238359E070-10373
chr39823095398231017E071-17715
chr39823208298232330E071-16402
chr39823365598233724E071-15008
chr39823391498233964E071-14768
chr39823773498237856E071-10876
chr39824252598242593E071-6139
chr39827212598272350E07123393
chr39827273198272989E07123999
chr39827321798273263E07124485
chr39829197898292571E07143246
chr39829275798292811E07144025
chr39829295498293006E07144222
chr39823095398231017E072-17715
chr39823208298232330E072-16402
chr39823365598233724E072-15008
chr39823391498233964E072-14768
chr39823773498237856E072-10876
chr39823816498238229E072-10503
chr39823827798238359E072-10373
chr39829197898292571E07243246
chr39829275798292811E07244025
chr39829295498293006E07244222
chr39829305998293254E07244327
chr39823208298232330E073-16402
chr39823816498238229E073-10503
chr39823827798238359E073-10373
chr39823095398231017E074-17715
chr39823208298232330E074-16402
chr39823365598233724E074-15008
chr39823391498233964E074-14768
chr39823551198235580E074-13152
chr39823773498237856E074-10876
chr39823816498238229E074-10503
chr39823827798238359E074-10373
chr39827212598272350E07423393
chr39829275798292811E07444025
chr39829295498293006E07444222
chr39829305998293254E07444327
chr39826772498267994E08118992
chr39826838898268455E08119656
chr39826861998268734E08119887
chr39827014398270554E08121411
chr39827066898270941E08121936
chr39827095198271113E08122219
chr39827668898276728E08127956
chr39827711898277193E08128386









Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr39824047998240618E067-8114
chr39824064798240687E067-8045
chr39824076398242334E067-6398
chr39824047998240618E068-8114
chr39824064798240687E068-8045
chr39824076398242334E068-6398
chr39824047998240618E069-8114
chr39824064798240687E069-8045
chr39824076398242334E069-6398
chr39824047998240618E070-8114
chr39824064798240687E070-8045
chr39824076398242334E070-6398
chr39824047998240618E071-8114
chr39824064798240687E071-8045
chr39824076398242334E071-6398
chr39824047998240618E072-8114
chr39824064798240687E072-8045
chr39824076398242334E072-6398
chr39824047998240618E073-8114
chr39824064798240687E073-8045
chr39824076398242334E073-6398
chr39824047998240618E074-8114
chr39824064798240687E074-8045
chr39824076398242334E074-6398
chr39824047998240618E081-8114
chr39824064798240687E081-8045
chr39824076398242334E081-6398
chr39824047998240618E082-8114
chr39824064798240687E082-8045
chr39824076398242334E082-6398