rs1462307

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0218 (6536/29902,GnomAD)
T==0243 (7076/29118,TOPMED)
T==0227 (1138/5008,1000G)
T==0180 (692/3854,ALSPAC)
T==0163 (605/3708,TWINSUK)
chr3:110783001 (GRCh38.p7) (3q13.13)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.110783001T>C
GRCh37.p13 chr 3NC_000003.11:g.110501848T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.393C=0.607
1000GenomesAmericanSub694T=0.180C=0.820
1000GenomesEast AsianSub1008T=0.089C=0.911
1000GenomesEuropeSub1006T=0.150C=0.850
1000GenomesGlobalStudy-wide5008T=0.227C=0.773
1000GenomesSouth AsianSub978T=0.260C=0.740
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.180C=0.820
The Genome Aggregation DatabaseAfricanSub8692T=0.349C=0.651
The Genome Aggregation DatabaseAmericanSub834T=0.170C=0.830
The Genome Aggregation DatabaseEast AsianSub1610T=0.096C=0.904
The Genome Aggregation DatabaseEuropeSub18464T=0.170C=0.829
The Genome Aggregation DatabaseGlobalStudy-wide29902T=0.218C=0.781
The Genome Aggregation DatabaseOtherSub302T=0.170C=0.830
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.243C=0.757
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.163C=0.837
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs14623070.000476alcohol dependence20201924

eQTL of rs1462307 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1462307 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.