SNP Detail Info-rs1469743

Organism: Homo sapiens

Alleles: G>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T=0262 (7815/29750,GnomAD)
T=0194 (5675/29118,TOPMED)
T=0201 (1009/5008,1000G)
T=0338 (1303/3854,ALSPAC)
T=0326 (1207/3708,TWINSUK)

Position: chr1:82712497 (GRCh38.p7) (1p31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.82712497G>T
GRCh37.p13 chr 1	NC_000001.10:g.83178180G>T

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.967	T=0.033
1000Genomes	American	Sub	694	G=0.750	T=0.250
1000Genomes	East Asian	Sub	1008	G=0.765	T=0.235
1000Genomes	Europe	Sub	1006	G=0.715	T=0.285
1000Genomes	Global	Study-wide	5008	G=0.799	T=0.201
1000Genomes	South Asian	Sub	978	G=0.730	T=0.270
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.662	T=0.338
The Genome Aggregation Database	African	Sub	8664	G=0.924	T=0.076
The Genome Aggregation Database	American	Sub	830	G=0.750	T=0.250
The Genome Aggregation Database	East Asian	Sub	1566	G=0.745	T=0.255
The Genome Aggregation Database	Europe	Sub	18388	G=0.647	T=0.352
The Genome Aggregation Database	Global	Study-wide	29750	G=0.737	T=0.262
The Genome Aggregation Database	Other	Sub	302	G=0.780	T=0.220
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.805	T=0.194
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.674	T=0.326

PMID	Title	Author	Journal
21703634	A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence.	Wang KS	J Psychiatr Res

SNP ID	p-value	Traits	Study
rs1469743	5.92E-05	alcohol dependence	21703634

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs1469743