SNP Detail Info-rs1471450

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0294 (8803/29858,GnomAD)
G==0246 (7171/29116,TOPMED)
G==0374 (1875/5008,1000G)

Position: chr13:54670721 (GRCh38.p7) (13q14.3)

Phenotype: AD

Dataset:

GWASCatalog

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.54670721G>A
GRCh37.p13 chr 13	NC_000013.10:g.55244856G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.043	A=0.957
1000Genomes	American	Sub	694	G=0.400	A=0.600
1000Genomes	East Asian	Sub	1008	G=0.710	A=0.290
1000Genomes	Europe	Sub	1006	G=0.340	A=0.660
1000Genomes	Global	Study-wide	5008	G=0.374	A=0.626
1000Genomes	South Asian	Sub	978	G=0.500	A=0.500
The Genome Aggregation Database	African	Sub	8714	G=0.087	A=0.913
The Genome Aggregation Database	American	Sub	836	G=0.390	A=0.610
The Genome Aggregation Database	East Asian	Sub	1608	G=0.733	A=0.267
The Genome Aggregation Database	Europe	Sub	18398	G=0.350	A=0.650
The Genome Aggregation Database	Global	Study-wide	29858	G=0.294	A=0.705
The Genome Aggregation Database	Other	Sub	302	G=0.320	A=0.680
Trans-Omics for Precision Medicine	Global	Study-wide	29116	G=0.246	A=0.753

PMID	Title	Author	Journal
29071344	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Zhou H	JAMA Psychiatry

SNP ID	p-value	Traits	Study
rs1471450	2E-06	alcohol dependence	29071344

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs1471450