rs1482912

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0155 (4644/29888,GnomAD)
T=0177 (5161/29118,TOPMED)
T=0150 (751/5008,1000G)
T=0096 (370/3854,ALSPAC)
T=0092 (342/3708,TWINSUK)
chr5:105781902 (GRCh38.p7) (5q21.3)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.105781902C>T
GRCh37.p13 chr 5NC_000005.9:g.105117603C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.656T=0.344
1000GenomesAmericanSub694C=0.920T=0.080
1000GenomesEast AsianSub1008C=0.958T=0.042
1000GenomesEuropeSub1006C=0.925T=0.075
1000GenomesGlobalStudy-wide5008C=0.850T=0.150
1000GenomesSouth AsianSub978C=0.880T=0.120
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.904T=0.096
The Genome Aggregation DatabaseAfricanSub8698C=0.694T=0.306
The Genome Aggregation DatabaseAmericanSub834C=0.950T=0.050
The Genome Aggregation DatabaseEast AsianSub1608C=0.953T=0.047
The Genome Aggregation DatabaseEuropeSub18446C=0.901T=0.098
The Genome Aggregation DatabaseGlobalStudy-wide29888C=0.844T=0.155
The Genome Aggregation DatabaseOtherSub302C=0.870T=0.130
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.822T=0.177
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.908T=0.092
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs14829120.000603alcohol dependence20201924

eQTL of rs1482912 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1482912 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.