rs1490901

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0376 (11238/29874,GnomAD)
A=0327 (9540/29118,TOPMED)
A=0302 (1514/5008,1000G)
A=0453 (1744/3854,ALSPAC)
A=0428 (1588/3708,TWINSUK)
chr4:111236642 (GRCh38.p7) (4q25)
AD
GWASdb2
1   publication(s)
See rs on genome
3 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.111236642G>A
GRCh37.p13 chr 4NC_000004.11:g.112157798G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.751A=0.249
1000GenomesAmericanSub694G=0.700A=0.300
1000GenomesEast AsianSub1008G=0.771A=0.229
1000GenomesEuropeSub1006G=0.601A=0.399
1000GenomesGlobalStudy-wide5008G=0.698A=0.302
1000GenomesSouth AsianSub978G=0.650A=0.350
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.547A=0.453
The Genome Aggregation DatabaseAfricanSub8714G=0.712A=0.288
The Genome Aggregation DatabaseAmericanSub836G=0.700A=0.300
The Genome Aggregation DatabaseEast AsianSub1592G=0.786A=0.214
The Genome Aggregation DatabaseEuropeSub18430G=0.563A=0.436
The Genome Aggregation DatabaseGlobalStudy-wide29874G=0.623A=0.376
The Genome Aggregation DatabaseOtherSub302G=0.710A=0.290
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.672A=0.327
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.572A=0.428
PMID Title Author Journal

P-Value

SNP ID p-value Traits Study
rs14909019.34E-05alcohol consumptionpha001397

eQTL of rs1490901 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1490901 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr4112131904112131954E070-25844
chr4112131993112132090E070-25708
chr4112132167112132239E070-25559