SNP Detail Info-rs1490901

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0376 (11238/29874,GnomAD)
A=0327 (9540/29118,TOPMED)
A=0302 (1514/5008,1000G)
A=0453 (1744/3854,ALSPAC)
A=0428 (1588/3708,TWINSUK)

Position: chr4:111236642 (GRCh38.p7) (4q25)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 3 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 4	NC_000004.12:g.111236642G>A
GRCh37.p13 chr 4	NC_000004.11:g.112157798G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.751	A=0.249
1000Genomes	American	Sub	694	G=0.700	A=0.300
1000Genomes	East Asian	Sub	1008	G=0.771	A=0.229
1000Genomes	Europe	Sub	1006	G=0.601	A=0.399
1000Genomes	Global	Study-wide	5008	G=0.698	A=0.302
1000Genomes	South Asian	Sub	978	G=0.650	A=0.350
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.547	A=0.453
The Genome Aggregation Database	African	Sub	8714	G=0.712	A=0.288
The Genome Aggregation Database	American	Sub	836	G=0.700	A=0.300
The Genome Aggregation Database	East Asian	Sub	1592	G=0.786	A=0.214
The Genome Aggregation Database	Europe	Sub	18430	G=0.563	A=0.436
The Genome Aggregation Database	Global	Study-wide	29874	G=0.623	A=0.376
The Genome Aggregation Database	Other	Sub	302	G=0.710	A=0.290
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.672	A=0.327
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.572	A=0.428

PMID	Title	Author	Journal

SNP ID	p-value	Traits	Study
rs1490901	9.34E-05	alcohol consumption	pha001397

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr4	112131904	112131954	E070	-25844
chr4	112131993	112132090	E070	-25708
chr4	112132167	112132239	E070	-25559

rs1490901