SNP Detail Info-rs1495858

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0217 (6481/29850,GnomAD)
A=0168 (4892/29116,TOPMED)
A=0216 (1083/5008,1000G)
A=0250 (963/3854,ALSPAC)
A=0248 (920/3708,TWINSUK)

Position: chr13:70668635 (GRCh38.p7) (13q21.33)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.70668635G>A
GRCh37.p13 chr 13	NC_000013.10:g.71242767G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.939	A=0.061
1000Genomes	American	Sub	694	G=0.840	A=0.160
1000Genomes	East Asian	Sub	1008	G=0.690	A=0.310
1000Genomes	Europe	Sub	1006	G=0.706	A=0.294
1000Genomes	Global	Study-wide	5008	G=0.784	A=0.216
1000Genomes	South Asian	Sub	978	G=0.710	A=0.290
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.750	A=0.250
The Genome Aggregation Database	African	Sub	8716	G=0.917	A=0.083
The Genome Aggregation Database	American	Sub	834	G=0.850	A=0.150
The Genome Aggregation Database	East Asian	Sub	1598	G=0.688	A=0.312
The Genome Aggregation Database	Europe	Sub	18400	G=0.723	A=0.276
The Genome Aggregation Database	Global	Study-wide	29850	G=0.782	A=0.217
The Genome Aggregation Database	Other	Sub	302	G=0.860	A=0.140
Trans-Omics for Precision Medicine	Global	Study-wide	29116	G=0.832	A=0.168
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.752	A=0.248

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs1495858	0.000664	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs1495858