SNP Detail Info-rs1500422

Organism: Homo sapiens

Alleles: G>A / G>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0268 (8001/29814,GnomAD)
A=0219 (6380/29118,TOPMED)
A=0167 (838/5008,1000G)
A=0364 (1401/3854,ALSPAC)
A=0366 (1357/3708,TWINSUK)

Position: chr3:20678646 (GRCh38.p7) (3p24.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.956	A=0.044
1000Genomes	American	Sub	694	G=0.700	A=0.300
1000Genomes	East Asian	Sub	1008	G=0.970	A=0.030
1000Genomes	Europe	Sub	1006	G=0.652	A=0.348
1000Genomes	Global	Study-wide	5008	G=0.833	A=0.167
1000Genomes	South Asian	Sub	978	G=0.810	A=0.190
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.636	A=0.364
The Genome Aggregation Database	African	Sub	8700	G=0.918	A=0.082
The Genome Aggregation Database	American	Sub	818	G=0.650	A=0.350
The Genome Aggregation Database	East Asian	Sub	1620	G=0.978	A=0.022
The Genome Aggregation Database	Europe	Sub	18374	G=0.626	A=0.373
The Genome Aggregation Database	Global	Study-wide	29814	G=0.731	A=0.268
The Genome Aggregation Database	Other	Sub	302	G=0.630	A=0.370
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.780	A=0.219
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.634	A=0.366

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs1500422	0.000631	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs1500422