rs1501576

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0314 (9394/29904,GnomAD)
C=0349 (10173/29118,TOPMED)
C=0297 (1489/5008,1000G)
C=0249 (961/3854,ALSPAC)
C=0246 (914/3708,TWINSUK)
chr9:2918656 (GRCh38.p7) (9p24.2)
AD
GWASdb2
1   publication(s)
See rs on genome
29 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.2918656T>C
GRCh37.p13 chr 9NC_000009.11:g.2918656T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.455C=0.545
1000GenomesAmericanSub694T=0.820C=0.180
1000GenomesEast AsianSub1008T=0.905C=0.095
1000GenomesEuropeSub1006T=0.735C=0.265
1000GenomesGlobalStudy-wide5008T=0.703C=0.297
1000GenomesSouth AsianSub978T=0.710C=0.290
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.751C=0.249
The Genome Aggregation DatabaseAfricanSub8692T=0.483C=0.517
The Genome Aggregation DatabaseAmericanSub838T=0.830C=0.170
The Genome Aggregation DatabaseEast AsianSub1604T=0.911C=0.089
The Genome Aggregation DatabaseEuropeSub18468T=0.754C=0.245
The Genome Aggregation DatabaseGlobalStudy-wide29904T=0.685C=0.314
The Genome Aggregation DatabaseOtherSub302T=0.710C=0.290
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.650C=0.349
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.754C=0.246
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs15015760.00053alcohol dependence20201924

eQTL of rs1501576 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1501576 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr929666482966827E06847992
chr929669422967138E06848286
chr929666482966827E07047992
chr929669422967138E07048286
chr929091872909276E081-9380
chr929096832909723E081-8933
chr929098302910166E081-8490
chr929104212910604E081-8052
chr929109822911062E081-7594
chr929110652911115E081-7541
chr929111882911628E081-7028
chr929117782911837E081-6819
chr929283072928357E0819651
chr929283662929057E0819710
chr929577492957934E08139093
chr929579582958008E08139302
chr929580722958354E08139416
chr929630812963195E08144425
chr929632382963318E08144582
chr929634412963553E08144785
chr929644242964519E08145768
chr929645842965154E08145928
chr929655132965567E08146857
chr929666482966827E08147992
chr929669422967138E08148286
chr929130302913391E082-5265
chr929634412963553E08244785
chr929666482966827E08247992
chr929669422967138E08248286