rs150954431

Homo sapiens
C>T
NCOR2 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0013 (401/29928,GnomAD)
T=0013 (406/29118,TOPMED)
T=0010 (49/5008,1000G)
T=0020 (78/3854,ALSPAC)
T=0016 (61/3708,TWINSUK)
chr12:124517777 (GRCh38.p7) (12q24.31)
CD
GWASdb2 | GWASCatalog
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 12NC_000012.12:g.124517777C>T
GRCh37.p13 chr 12NC_000012.11:g.125002323C>T
NCOR2 RefSeqGeneNG_022928.2:g.54688G>A

Gene: NCOR2, nuclear receptor corepressor 2(minus strand)

Molecule type Change Amino acid[Codon] SO Term
NCOR2 transcript variant 2NM_001077261.3:c.N/AIntron Variant
NCOR2 transcript variant 3NM_001206654.1:c.N/AIntron Variant
NCOR2 transcript variant 1NM_006312.5:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.998T=0.002
1000GenomesAmericanSub694C=0.980T=0.020
1000GenomesEast AsianSub1008C=1.000T=0.000
1000GenomesEuropeSub1006C=0.969T=0.031
1000GenomesGlobalStudy-wide5008C=0.990T=0.010
1000GenomesSouth AsianSub978C=1.000T=0.000
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.980T=0.020
The Genome Aggregation DatabaseAfricanSub8698C=0.996T=0.004
The Genome Aggregation DatabaseAmericanSub838C=0.990T=0.010
The Genome Aggregation DatabaseEast AsianSub1622C=1.000T=0.000
The Genome Aggregation DatabaseEuropeSub18468C=0.982T=0.018
The Genome Aggregation DatabaseGlobalStudy-wide29928C=0.986T=0.013
The Genome Aggregation DatabaseOtherSub302C=0.910T=0.090
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.986T=0.013
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.984T=0.016
PMID Title Author Journal
23958962Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.Gelernter JMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs1509544315E-07cocaine dependence23958962

eQTL of rs150954431 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs150954431 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr12124954933124955044E067-47279
chr12124955119124955272E067-47051
chr12124955550124955600E067-46723
chr12124955627124955687E067-46636
chr12124955758124956006E067-46317
chr12124956081124956131E067-46192
chr12124958622124958672E067-43651
chr12124958726124958826E067-43497
chr12124958976124959026E067-43297
chr12124959096124960335E067-41988
chr12124963820124963872E067-38451
chr12124963883124963981E067-38342
chr12124964036124964114E067-38209
chr12124964194124964326E067-37997
chr12124964331124964476E067-37847
chr12124964489124964663E067-37660
chr12124964668124965755E067-36568
chr12124965842124966292E067-36031
chr12124971026124971072E067-31251
chr12124971230124971326E067-30997
chr12124971368124971458E067-30865
chr12124971677124972883E067-29440
chr12124972956124973435E067-28888
chr12124973533124973785E067-28538
chr12124975253124976015E067-26308
chr12124976016124976047E067-26276
chr12124976066124976147E067-26176
chr12124976185124976309E067-26014
chr12124976388124976462E067-25861
chr12124976481124976640E067-25683
chr12124976646124976789E067-25534
chr12124976895124977240E067-25083
chr12124980181124980231E067-22092
chr12124980233124980329E067-21994
chr12124980342124980392E067-21931
chr12124980416124980621E067-21702
chr12124980793124980843E067-21480
chr12124980861124981015E067-21308
chr12124981036124981153E067-21170
chr12124981217124984150E067-18173
chr12124984206124984360E067-17963
chr12124984424124986402E067-15921
chr12124986425124986722E067-15601
chr12124986812124986862E067-15461
chr12124986880124986996E067-15327
chr12124987080124987209E067-15114
chr12124987240124987329E067-14994
chr12124987438124987700E067-14623
chr12124987710124987778E067-14545
chr12124987801124987907E067-14416
chr12124987999124988100E067-14223
chr12124988150124988200E067-14123
chr12124988297124988351E067-13972
chr12124988388124988494E067-13829
chr12124988543124988608E067-13715
chr12124988673124988748E067-13575
chr12124988761124988948E067-13375
chr12124988953124989534E067-12789
chr12124989701124989827E067-12496
chr12124989870124990213E067-12110
chr12124990266124990342E067-11981
chr12124990361124990497E067-11826
chr12124990535124991833E067-10490
chr12124991911124993749E067-8574
chr12124993805124995450E067-6873
chr12124995553124995617E067-6706
chr12124995631124995711E067-6612
chr12124995839124996185E067-6138
chr12124996678124998549E067-3774
chr12124998562124998713E067-3610
chr12124998810124998904E067-3419
chr12124998953124999142E067-3181
chr12124999908125000546E067-1777
chr12125000547125001156E067-1167
chr12125001173125001254E067-1069
chr12125004810125005267E0672487
chr12125005290125005379E0672967
chr12125006957125007054E0674634
chr12125007057125007363E0674734
chr12125007413125007508E0675090
chr12125007523125008161E0675200
chr12125008237125008345E0675914
chr12125008404125008651E0676081
chr12125008709125009189E0676386
chr12125009217125009542E0676894
chr12125009608125009699E0677285
chr12125009844125009941E0677521
chr12125009952125010379E0677629
chr12125010433125010501E0678110
chr12125010556125010834E0678233
chr12125012373125012954E06710050
chr12125013010125013218E06710687
chr12125013232125013327E06710909
chr12125013383125013444E06711060
chr12125016851125017359E06714528
chr12125017455125017522E06715132
chr12125017584125017881E06715261
chr12125018038125018226E06715715
chr12125021842125022003E06719519
chr12125022057125022166E06719734
chr12125022167125022658E06719844
chr12125022666125023689E06720343
chr12125023731125023895E06721408
chr12125023908125024053E06721585
chr12125024078125024392E06721755
chr12125024402125024541E06722079
chr12125024616125024983E06722293
chr12125026548125026668E06724225
chr12125026707125027007E06724384
chr12125027009125027063E06724686
chr12125027170125027242E06724847
chr12125027245125027542E06724922
chr12125027634125029553E06725311
chr12125029601125029684E06727278
chr12125029800125029850E06727477
chr12125029974125031169E06727651
chr12125032861125033098E06730538
chr12125033281125034029E06730958
chr12125034072125034646E06731749
chr12125034685125034756E06732362
chr12125034767125036731E06732444
chr12125036880125036924E06734557
chr12125036987125037191E06734664
chr12125038063125038198E06735740
chr12125038262125038302E06735939
chr12125038453125038630E06736130
chr12125038648125038803E06736325
chr12125039106125039626E06736783
chr12125039654125039977E06737331
chr12125040003125040177E06737680
chr12125040245125040398E06737922
chr12125040414125040917E06738091
chr12125040926125041072E06738603
chr12125041259125041309E06738936
chr12125041349125041389E06739026
chr12125041406125041560E06739083
chr12125041588125042325E06739265
chr12125042330125042728E06740007
chr12125042949125043131E06740626
chr12125045378125045481E06743055
chr12125045680125045759E06743357
chr12125045905125046132E06743582
chr12125046258125046309E06743935
chr12125047768125048529E06745445
chr12124954933124955044E068-47279
chr12124955119124955272E068-47051
chr12124955550124955600E068-46723
chr12124958622124958672E068-43651
chr12124958726124958826E068-43497
chr12124958976124959026E068-43297
chr12124959096124960335E068-41988
chr12124960596124960650E068-41673
chr12124960708124960762E068-41561
chr12124960876124960978E068-41345
chr12124963820124963872E068-38451
chr12124963883124963981E068-38342
chr12124964036124964114E068-38209
chr12124964194124964326E068-37997
chr12124964331124964476E068-37847
chr12124964489124964663E068-37660
chr12124964668124965755E068-36568
chr12124965842124966292E068-36031
chr12124970750124970981E068-31342
chr12124971026124971072E068-31251
chr12124971230124971326E068-30997
chr12124971368124971458E068-30865
chr12124971677124972883E068-29440
chr12124972956124973435E068-28888
chr12124975253124976015E068-26308
chr12124976016124976047E068-26276
chr12124976066124976147E068-26176
chr12124976185124976309E068-26014
chr12124976388124976462E068-25861
chr12124976481124976640E068-25683
chr12124976646124976789E068-25534
chr12124978440124979177E068-23146
chr12124981217124984150E068-18173
chr12124984206124984360E068-17963
chr12124984424124986402E068-15921
chr12124986425124986722E068-15601
chr12124986812124986862E068-15461
chr12124986880124986996E068-15327
chr12124987080124987209E068-15114
chr12124987240124987329E068-14994
chr12124987438124987700E068-14623
chr12124987710124987778E068-14545
chr12124987801124987907E068-14416
chr12124987999124988100E068-14223
chr12124988150124988200E068-14123
chr12124988297124988351E068-13972
chr12124988388124988494E068-13829
chr12124988543124988608E068-13715
chr12124988673124988748E068-13575
chr12124988761124988948E068-13375
chr12124988953124989534E068-12789
chr12124989701124989827E068-12496
chr12124989870124990213E068-12110
chr12124990266124990342E068-11981
chr12124990361124990497E068-11826
chr12124990535124991833E068-10490
chr12124991911124993749E068-8574
chr12124993805124995450E068-6873
chr12124995553124995617E068-6706
chr12124995631124995711E068-6612
chr12124995839124996185E068-6138
chr12124996212124996290E068-6033
chr12124996311124996440E068-5883
chr12124996678124998549E068-3774
chr12124998562124998713E068-3610
chr12124998810124998904E068-3419
chr12124998953124999142E068-3181
chr12124999647124999839E068-2484
chr12124999908125000546E068-1777
chr12125000547125001156E068-1167
chr12125001173125001254E068-1069
chr12125004810125005267E0682487
chr12125005290125005379E0682967
chr12125005416125006240E0683093
chr12125006957125007054E0684634
chr12125007057125007363E0684734
chr12125007413125007508E0685090
chr12125007523125008161E0685200
chr12125008237125008345E0685914
chr12125008404125008651E0686081
chr12125008709125009189E0686386
chr12125009217125009542E0686894
chr12125009608125009699E0687285
chr12125009844125009941E0687521
chr12125009952125010379E0687629
chr12125010433125010501E0688110
chr12125012373125012954E06810050
chr12125013010125013218E06810687
chr12125013232125013327E06810909
chr12125013383125013444E06811060
chr12125015852125016193E06813529
chr12125016271125016321E06813948
chr12125016536125016616E06814213
chr12125016631125016677E06814308
chr12125016851125017359E06814528
chr12125017455125017522E06815132
chr12125017584125017881E06815261
chr12125018038125018226E06815715
chr12125021077125021730E06818754
chr12125021842125022003E06819519
chr12125022057125022166E06819734
chr12125022167125022658E06819844
chr12125022666125023689E06820343
chr12125023731125023895E06821408
chr12125023908125024053E06821585
chr12125024078125024392E06821755
chr12125024402125024541E06822079
chr12125024616125024983E06822293
chr12125025948125026248E06823625
chr12125026548125026668E06824225
chr12125026707125027007E06824384
chr12125027009125027063E06824686
chr12125027170125027242E06824847
chr12125027245125027542E06824922
chr12125027634125029553E06825311
chr12125029601125029684E06827278
chr12125029800125029850E06827477
chr12125029974125031169E06827651
chr12125031206125031446E06828883
chr12125032861125033098E06830538
chr12125033281125034029E06830958
chr12125034072125034646E06831749
chr12125034685125034756E06832362
chr12125034767125036731E06832444
chr12125036880125036924E06834557
chr12125036987125037191E06834664
chr12125037588125037655E06835265
chr12125037662125037798E06835339
chr12125038063125038198E06835740
chr12125038262125038302E06835939
chr12125038453125038630E06836130
chr12125038648125038803E06836325
chr12125039106125039626E06836783
chr12125039654125039977E06837331
chr12125040003125040177E06837680
chr12125040245125040398E06837922
chr12125040414125040917E06838091
chr12125040926125041072E06838603
chr12125041259125041309E06838936
chr12125041349125041389E06839026
chr12125041406125041560E06839083
chr12125041588125042325E06839265
chr12125042330125042728E06840007
chr12125045905125046132E06843582
chr12125046258125046309E06843935
chr12125047768125048529E06845445
chr12124954769124954843E069-47480
chr12124954844124954899E069-47424
chr12124954933124955044E069-47279
chr12124955119124955272E069-47051
chr12124955550124955600E069-46723
chr12124955627124955687E069-46636
chr12124955758124956006E069-46317
chr12124958622124958672E069-43651
chr12124958726124958826E069-43497
chr12124958976124959026E069-43297
chr12124959096124960335E069-41988
chr12124960596124960650E069-41673
chr12124960708124960762E069-41561
chr12124960876124960978E069-41345
chr12124963397124963480E069-38843
chr12124963489124963545E069-38778
chr12124963569124963629E069-38694
chr12124963707124963747E069-38576
chr12124963820124963872E069-38451
chr12124963883124963981E069-38342
chr12124964036124964114E069-38209
chr12124964194124964326E069-37997
chr12124964331124964476E069-37847
chr12124964489124964663E069-37660
chr12124964668124965755E069-36568
chr12124965842124966292E069-36031
chr12124966336124966964E069-35359
chr12124968433124968552E069-33771
chr12124968596124968706E069-33617
chr12124968716124968926E069-33397
chr12124969824124969874E069-32449
chr12124969882124970027E069-32296
chr12124970057124970107E069-32216
chr12124970179124970229E069-32094
chr12124970232124970341E069-31982
chr12124970365124970465E069-31858
chr12124970563124970682E069-31641
chr12124970750124970981E069-31342
chr12124971026124971072E069-31251
chr12124971230124971326E069-30997
chr12124971368124971458E069-30865
chr12124971677124972883E069-29440
chr12124972956124973435E069-28888
chr12124973533124973785E069-28538
chr12124973823124974019E069-28304
chr12124975253124976015E069-26308
chr12124976016124976047E069-26276
chr12124976066124976147E069-26176
chr12124976185124976309E069-26014
chr12124976388124976462E069-25861
chr12124976481124976640E069-25683
chr12124976646124976789E069-25534
chr12124976895124977240E069-25083
chr12124980181124980231E069-22092
chr12124980233124980329E069-21994
chr12124980342124980392E069-21931
chr12124980416124980621E069-21702
chr12124980793124980843E069-21480
chr12124980861124981015E069-21308
chr12124981036124981153E069-21170
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chr12124984206124984360E069-17963
chr12124984424124986402E069-15921
chr12124986425124986722E069-15601
chr12124986812124986862E069-15461
chr12124986880124986996E069-15327
chr12124987080124987209E069-15114
chr12124987240124987329E069-14994
chr12124987438124987700E069-14623
chr12124987710124987778E069-14545
chr12124987801124987907E069-14416
chr12124987999124988100E069-14223
chr12124988150124988200E069-14123
chr12124988297124988351E069-13972
chr12124988388124988494E069-13829
chr12124988543124988608E069-13715
chr12124988673124988748E069-13575
chr12124988761124988948E069-13375
chr12124988953124989534E069-12789
chr12124989701124989827E069-12496
chr12124989870124990213E069-12110
chr12124990266124990342E069-11981
chr12124990361124990497E069-11826
chr12124990535124991833E069-10490
chr12124991911124993749E069-8574
chr12124993805124995450E069-6873
chr12124995553124995617E069-6706
chr12124995631124995711E069-6612
chr12124995839124996185E069-6138
chr12124996212124996290E069-6033
chr12124996311124996440E069-5883
chr12124996678124998549E069-3774
chr12124998562124998713E069-3610
chr12124998810124998904E069-3419
chr12124998953124999142E069-3181
chr12124999521124999591E069-2732
chr12124999647124999839E069-2484
chr12124999908125000546E069-1777
chr12125000547125001156E069-1167
chr12125001173125001254E069-1069
chr12125004810125005267E0692487
chr12125005290125005379E0692967
chr12125006425125006469E0694102
chr12125006598125006745E0694275
chr12125006957125007054E0694634
chr12125007057125007363E0694734
chr12125007413125007508E0695090
chr12125007523125008161E0695200
chr12125008237125008345E0695914
chr12125008404125008651E0696081
chr12125009844125009941E0697521
chr12125009952125010379E0697629
chr12125012373125012954E06910050
chr12125013010125013218E06910687
chr12125013232125013327E06910909
chr12125013383125013444E06911060
chr12125015852125016193E06913529
chr12125016271125016321E06913948
chr12125016536125016616E06914213
chr12125016631125016677E06914308
chr12125016851125017359E06914528
chr12125017455125017522E06915132
chr12125017584125017881E06915261
chr12125021077125021730E06918754
chr12125021842125022003E06919519
chr12125022057125022166E06919734
chr12125022167125022658E06919844
chr12125022666125023689E06920343
chr12125023731125023895E06921408
chr12125023908125024053E06921585
chr12125024078125024392E06921755
chr12125024402125024541E06922079
chr12125024616125024983E06922293
chr12125026548125026668E06924225
chr12125026707125027007E06924384
chr12125027009125027063E06924686
chr12125027170125027242E06924847
chr12125027245125027542E06924922
chr12125027634125029553E06925311
chr12125029601125029684E06927278
chr12125029800125029850E06927477
chr12125029974125031169E06927651
chr12125031206125031446E06928883
chr12125033281125034029E06930958
chr12125034072125034646E06931749
chr12125034685125034756E06932362
chr12125034767125036731E06932444
chr12125036880125036924E06934557
chr12125036987125037191E06934664
chr12125038063125038198E06935740
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