Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 4 | NC_000004.12:g.141609456C>T |
GRCh37.p13 chr 4 | NC_000004.11:g.142530609C>T |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.371 | T=0.629 |
1000Genomes | American | Sub | 694 | C=0.350 | T=0.650 |
1000Genomes | East Asian | Sub | 1008 | C=0.055 | T=0.945 |
1000Genomes | Europe | Sub | 1006 | C=0.433 | T=0.567 |
1000Genomes | Global | Study-wide | 5008 | C=0.308 | T=0.692 |
1000Genomes | South Asian | Sub | 978 | C=0.320 | T=0.680 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.428 | T=0.572 |
The Genome Aggregation Database | African | Sub | 8660 | C=0.365 | T=0.635 |
The Genome Aggregation Database | American | Sub | 838 | C=0.310 | T=0.690 |
The Genome Aggregation Database | East Asian | Sub | 1616 | C=0.039 | T=0.961 |
The Genome Aggregation Database | Europe | Sub | 18406 | C=0.399 | T=0.600 |
The Genome Aggregation Database | Global | Study-wide | 29822 | C=0.366 | T=0.633 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.360 | T=0.640 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.375 | T=0.624 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.415 | T=0.585 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs1519548 | 0.000288 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr4 | 142573430 | 142573920 | E068 | 42821 |
chr4 | 142573430 | 142573920 | E074 | 42821 |
chr4 | 142574074 | 142574175 | E074 | 43465 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr4 | 142556973 | 142558580 | E067 | 26364 |
chr4 | 142556973 | 142558580 | E068 | 26364 |
chr4 | 142558619 | 142558695 | E068 | 28010 |
chr4 | 142556973 | 142558580 | E069 | 26364 |
chr4 | 142558619 | 142558695 | E069 | 28010 |
chr4 | 142556973 | 142558580 | E071 | 26364 |
chr4 | 142558619 | 142558695 | E071 | 28010 |
chr4 | 142556973 | 142558580 | E072 | 26364 |
chr4 | 142556973 | 142558580 | E073 | 26364 |
chr4 | 142556973 | 142558580 | E074 | 26364 |
chr4 | 142556973 | 142558580 | E082 | 26364 |