Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 3 | NC_000003.12:g.27129286G>A |
GRCh37.p13 chr 3 | NC_000003.11:g.27170777G>A |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
NEK10 transcript variant 1 | NM_001031741.3:c. | N/A | Intron Variant |
NEK10 transcript variant 4 | NM_001304384.1:c. | N/A | Intron Variant |
NEK10 transcript variant 2 | NM_152534.4:c. | N/A | Intron Variant |
NEK10 transcript variant 3 | NM_199347.3:c. | N/A | Genic Downstream Transcript Variant |
NEK10 transcript variant X7 | XM_006712997.3:c. | N/A | Intron Variant |
NEK10 transcript variant X9 | XM_006712998.2:c. | N/A | Intron Variant |
NEK10 transcript variant X10 | XM_006712999.3:c. | N/A | Intron Variant |
NEK10 transcript variant X16 | XM_006713001.3:c. | N/A | Intron Variant |
NEK10 transcript variant X2 | XM_017005761.1:c. | N/A | Intron Variant |
NEK10 transcript variant X3 | XM_017005762.1:c. | N/A | Intron Variant |
NEK10 transcript variant X4 | XM_017005763.1:c. | N/A | Intron Variant |
NEK10 transcript variant X5 | XM_017005764.1:c. | N/A | Intron Variant |
NEK10 transcript variant X6 | XM_017005765.1:c. | N/A | Intron Variant |
NEK10 transcript variant X8 | XM_017005766.1:c. | N/A | Intron Variant |
NEK10 transcript variant X11 | XM_017005767.1:c. | N/A | Intron Variant |
NEK10 transcript variant X13 | XM_017005768.1:c. | N/A | Intron Variant |
NEK10 transcript variant X14 | XM_017005769.1:c. | N/A | Intron Variant |
NEK10 transcript variant X14 | XM_017005770.1:c. | N/A | Intron Variant |
NEK10 transcript variant X16 | XM_017005771.1:c. | N/A | Intron Variant |
NEK10 transcript variant X17 | XM_017005772.1:c. | N/A | Intron Variant |
NEK10 transcript variant X23 | XM_006713002.1:c. | N/A | Genic Downstream Transcript Variant |
NEK10 transcript variant X20 | XM_011533413.2:c. | N/A | Genic Downstream Transcript Variant |
NEK10 transcript variant X24 | XM_011533414.2:c. | N/A | Genic Downstream Transcript Variant |
NEK10 transcript variant X25 | XM_011533415.1:c. | N/A | Genic Downstream Transcript Variant |
NEK10 transcript variant X19 | XM_017005773.1:c. | N/A | Genic Downstream Transcript Variant |
NEK10 transcript variant X20 | XM_017005774.1:c. | N/A | Genic Downstream Transcript Variant |
NEK10 transcript variant X1 | XR_001740034.1:n. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.511 | A=0.489 |
1000Genomes | American | Sub | 694 | G=0.210 | A=0.790 |
1000Genomes | East Asian | Sub | 1008 | G=0.177 | A=0.823 |
1000Genomes | Europe | Sub | 1006 | G=0.294 | A=0.706 |
1000Genomes | Global | Study-wide | 5008 | G=0.304 | A=0.696 |
1000Genomes | South Asian | Sub | 978 | G=0.230 | A=0.770 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.317 | A=0.683 |
The Genome Aggregation Database | African | Sub | 8698 | G=0.455 | A=0.545 |
The Genome Aggregation Database | American | Sub | 836 | G=0.180 | A=0.820 |
The Genome Aggregation Database | East Asian | Sub | 1618 | G=0.144 | A=0.856 |
The Genome Aggregation Database | Europe | Sub | 18462 | G=0.306 | A=0.693 |
The Genome Aggregation Database | Global | Study-wide | 29914 | G=0.336 | A=0.663 |
The Genome Aggregation Database | Other | Sub | 300 | G=0.210 | A=0.790 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.345 | A=0.654 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.285 | A=0.715 |
PMID | Title | Author | Journal |
---|---|---|---|
21956439 | Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q. | Zuo L | Neuropsychopharmacology |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs1522153 | 3E-06 | alcohol dependence | 21956439 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr3 | 27123283 | 27123473 | E072 | -47304 |
chr3 | 27123283 | 27123473 | E074 | -47304 |
chr3 | 27123537 | 27123778 | E074 | -46999 |
chr3 | 27205722 | 27205808 | E081 | 34945 |
chr3 | 27208459 | 27208739 | E081 | 37682 |
chr3 | 27208784 | 27208894 | E081 | 38007 |
chr3 | 27208945 | 27208995 | E081 | 38168 |
chr3 | 27123804 | 27123983 | E082 | -46794 |
chr3 | 27208945 | 27208995 | E082 | 38168 |