rs1529075

Homo sapiens
T>G
LOC101928114 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0152 (4553/29950,GnomAD)
G=0134 (3906/29118,TOPMED)
G=0163 (815/5008,1000G)
G=0180 (692/3854,ALSPAC)
G=0186 (690/3708,TWINSUK)
chr3:34386453 (GRCh38.p7) (3p22.3)
AD
GWASdb2
1   publication(s)
See rs on genome
22 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.34386453T>G
GRCh37.p13 chr 3NC_000003.11:g.34427945T>G

Gene: LOC101928114, uncharacterized LOC101928114(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LINC01811 transcript variant X1XR_001740635.1:n.N/AIntron Variant
LINC01811 transcript variant X2XR_001740636.1:n.N/AIntron Variant
LINC01811 transcript variant X4XR_001740638.1:n.N/AIntron Variant
LINC01811 transcript variant X5XR_001740639.1:n.N/AIntron Variant
LINC01811 transcript variant X6XR_001740640.1:n.N/AIntron Variant
LINC01811 transcript variant X7XR_001740641.1:n.N/AIntron Variant
LINC01811 transcript variant X3XR_001740637.1:n.N/AGenic Downstream Transcript Variant
LINC01811 transcript variant X10XR_001740642.1:n.N/AGenic Downstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.993G=0.007
1000GenomesAmericanSub694T=0.890G=0.110
1000GenomesEast AsianSub1008T=0.572G=0.428
1000GenomesEuropeSub1006T=0.821G=0.179
1000GenomesGlobalStudy-wide5008T=0.837G=0.163
1000GenomesSouth AsianSub978T=0.880G=0.120
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.820G=0.180
The Genome Aggregation DatabaseAfricanSub8720T=0.958G=0.042
The Genome Aggregation DatabaseAmericanSub838T=0.840G=0.160
The Genome Aggregation DatabaseEast AsianSub1594T=0.578G=0.422
The Genome Aggregation DatabaseEuropeSub18496T=0.819G=0.180
The Genome Aggregation DatabaseGlobalStudy-wide29950T=0.848G=0.152
The Genome Aggregation DatabaseOtherSub302T=0.830G=0.170
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.865G=0.134
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.814G=0.186
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs15290750.000569alcohol dependence20201924

eQTL of rs1529075 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1529075 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr33442978634429890E0701841
chr33442825034428362E081305
chr33442840034428457E081455
chr33442855634428735E081611
chr33442879734429761E081852
chr33442978634429890E0811841
chr33443000534430134E0812060
chr33443019334430796E0812248
chr33443091734431072E0812972
chr33444744834447630E08119503
chr33444804534448099E08120100
chr33444846934448549E08120524
chr33444884434449015E08120899
chr33439332234393662E082-34283
chr33442825034428362E082305
chr33442840034428457E082455
chr33442855634428735E082611
chr33442879734429761E082852
chr33442978634429890E0821841
chr33443000534430134E0822060
chr33443019334430796E0822248
chr33444846934448549E08220524