rs153585

Homo sapiens
G>T
None
Check p-value
SNV (Single Nucleotide Variation)
G==0457 (13655/29868,GnomAD)
G==0381 (11098/29118,TOPMED)
T=0485 (2430/5008,1000G)
T=0444 (1710/3854,ALSPAC)
T=0440 (1631/3708,TWINSUK)
chr5:116846657 (GRCh38.p7) (5q23.1)
ND
GWASdb2
1   publication(s)
See rs on genome
10 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.116846657G>T
GRCh37.p13 chr 5NC_000005.9:g.116182353G>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
PMID Title Author Journal
17158188Novel genes identified in a high-density genome wide association study for nicotine dependence.Bierut LJHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs1535850.000431nicotine dependence17158188

eQTL of rs153585 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs153585 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr5116150796116151001E070-31352
chr5116151927116152348E070-30005
chr5116216435116216616E07034082
chr5116150796116151001E081-31352
chr5116201448116201683E08119095
chr5116201749116201865E08119396
chr5116201979116202029E08119626
chr5116149859116149909E082-32444
chr5116150513116150754E082-31599
chr5116150796116151001E082-31352