rs1538901

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0038 (1156/29950,GnomAD)
T==0066 (1921/29118,TOPMED)
T==0038 (192/5008,1000G)
T==0000 (1/3854,ALSPAC)
T==0002 (6/3708,TWINSUK)
chr13:75942758 (GRCh38.p7) (13q22.2)
AD
GWASdb2
1   publication(s)
See rs on genome
7 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.75942758T>C
GRCh37.p13 chr 13NC_000013.10:g.76516894T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.128C=0.872
1000GenomesAmericanSub694T=0.030C=0.970
1000GenomesEast AsianSub1008T=0.000C=1.000
1000GenomesEuropeSub1006T=0.001C=0.999
1000GenomesGlobalStudy-wide5008T=0.038C=0.962
1000GenomesSouth AsianSub978T=0.000C=1.000
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.000C=1.000
The Genome Aggregation DatabaseAfricanSub8706T=0.129C=0.871
The Genome Aggregation DatabaseAmericanSub838T=0.010C=0.990
The Genome Aggregation DatabaseEast AsianSub1604T=0.000C=1.000
The Genome Aggregation DatabaseEuropeSub18500T=0.001C=0.998
The Genome Aggregation DatabaseGlobalStudy-wide29950T=0.038C=0.961
The Genome Aggregation DatabaseOtherSub302T=0.010C=0.990
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.066C=0.934
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.002C=0.998
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs15389010.000364alcohol dependence20201924

eQTL of rs1538901 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1538901 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr137652153476521599E0724640
chr137651996776521486E0813073
chr137652153476521599E0814640
chr137652167676521782E0814782
chr137652190476521956E0815010
chr137652266076522730E0815766
chr137651996776521486E0823073