rs154101

Homo sapiens
A>C / A>G / A>T
CTB-12O2.1 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C=0135 (3958/29118,TOPMED)
C=0080 (400/5008,1000G)
chr5:152103802 (GRCh38.p7) (5q33.1)
ND
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.152103802A>C
GRCh38.p7 chr 5NC_000005.10:g.152103802A>G
GRCh38.p7 chr 5NC_000005.10:g.152103802A>T
GRCh37.p13 chr 5NC_000005.9:g.151483363A>C
GRCh37.p13 chr 5NC_000005.9:g.151483363A>G
GRCh37.p13 chr 5NC_000005.9:g.151483363A>T

Gene: CTB-12O2.1, uncharacterized LOC101927115(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LINC01933 transcriptNR_109876.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.970C=0.030
1000GenomesAmericanSub694A=0.880C=0.120
1000GenomesEast AsianSub1008A=1.000C=0.000
1000GenomesEuropeSub1006A=0.786C=0.214
1000GenomesGlobalStudy-wide5008A=0.920C=0.080
1000GenomesSouth AsianSub978A=0.930C=0.070
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.864C=0.135
PMID Title Author Journal
17158188Novel genes identified in a high-density genome wide association study for nicotine dependence.Bierut LJHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs1541010.000759nicotine dependence17158188

eQTL of rs154101 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs154101 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.