SNP Detail Info-rs1542668

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A==0271 (8093/29786,GnomAD)
A==0281 (8207/29116,TOPMED)
A==0231 (1157/5008,1000G)
A==0320 (1232/3854,ALSPAC)
A==0327 (1213/3708,TWINSUK)

Position: chr14:42079709 (GRCh38.p7) (14q21.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 14	NC_000014.9:g.42079709A>G
GRCh37.p13 chr 14	NC_000014.8:g.42548912A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.233	G=0.767
1000Genomes	American	Sub	694	A=0.240	G=0.760
1000Genomes	East Asian	Sub	1008	A=0.057	G=0.943
1000Genomes	Europe	Sub	1006	A=0.356	G=0.644
1000Genomes	Global	Study-wide	5008	A=0.231	G=0.769
1000Genomes	South Asian	Sub	978	A=0.270	G=0.730
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.320	G=0.680
The Genome Aggregation Database	African	Sub	8706	A=0.252	G=0.748
The Genome Aggregation Database	American	Sub	830	A=0.210	G=0.790
The Genome Aggregation Database	East Asian	Sub	1596	A=0.083	G=0.917
The Genome Aggregation Database	Europe	Sub	18352	A=0.298	G=0.701
The Genome Aggregation Database	Global	Study-wide	29786	A=0.271	G=0.728
The Genome Aggregation Database	Other	Sub	302	A=0.350	G=0.650
Trans-Omics for Precision Medicine	Global	Study-wide	29116	A=0.281	G=0.718
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.327	G=0.673

PMID	Title	Author	Journal
21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Heath AC	Biol Psychiatry

SNP ID	p-value	Traits	Study
rs1542668	2.7E-05	alcoholism (heaviness of drinking)	21529783

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs1542668