rs154791

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0302 (9033/29822,GnomAD)
A=0280 (8157/29118,TOPMED)
A=0332 (1664/5008,1000G)
A=0294 (1134/3854,ALSPAC)
A=0303 (1124/3708,TWINSUK)
chr5:16448928 (GRCh38.p7) (5p15.1)
AD
GWASdb2
1   publication(s)
See rs on genome
89 Enhancers around
20 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.16448928G>A
GRCh37.p13 chr 5NC_000005.9:g.16449037G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.774A=0.226
1000GenomesAmericanSub694G=0.600A=0.400
1000GenomesEast AsianSub1008G=0.562A=0.438
1000GenomesEuropeSub1006G=0.742A=0.258
1000GenomesGlobalStudy-wide5008G=0.668A=0.332
1000GenomesSouth AsianSub978G=0.610A=0.390
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.706A=0.294
The Genome Aggregation DatabaseAfricanSub8658G=0.757A=0.243
The Genome Aggregation DatabaseAmericanSub836G=0.610A=0.390
The Genome Aggregation DatabaseEast AsianSub1610G=0.543A=0.457
The Genome Aggregation DatabaseEuropeSub18416G=0.686A=0.313
The Genome Aggregation DatabaseGlobalStudy-wide29822G=0.697A=0.302
The Genome Aggregation DatabaseOtherSub302G=0.710A=0.290
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.719A=0.280
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.697A=0.303
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs1547910.000237alcohol dependence21314694

eQTL of rs154791 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs154791 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr51641142716411568E067-37469
chr51641159916411871E067-37166
chr51645492716455097E0675890
chr51645588416456775E0676847
chr51645895116459172E0679914
chr51646195216462302E06712915
chr51646709916468429E06718062
chr51646934616469419E06720309
chr51648682316487273E06737786
chr51649198516492181E06742948
chr51649224716492310E06743210
chr51649242816493194E06743391
chr51649320216494179E06744165
chr51645588416456775E0686847
chr51646709916468429E06818062
chr51648927816489916E06840241
chr51649198516492181E06842948
chr51649242816493194E06843391
chr51649320216494179E06844165
chr51645588416456775E0696847
chr51646284216462892E06913805
chr51646709916468429E06918062
chr51648927816489916E06940241
chr51649198516492181E06942948
chr51649224716492310E06943210
chr51649242816493194E06943391
chr51649320216494179E06944165
chr51641842516419387E070-29650
chr51642774316428001E070-21036
chr51642811416428210E070-20827
chr51645816116458252E0709124
chr51645895116459172E0709914
chr51645949116460044E07010454
chr51646195216462302E07012915
chr51646232816462423E07013291
chr51646284216462892E07013805
chr51646915416469296E07020117
chr51646934616469419E07020309
chr51645383916453949E0714802
chr51645553116455769E0716494
chr51645588416456775E0716847
chr51645682216456915E0717785
chr51646125416461403E07112217
chr51646195216462302E07112915
chr51646232816462423E07113291
chr51646284216462892E07113805
chr51646709916468429E07118062
chr51648105316481197E07132016
chr51648927816489916E07140241
chr51649198516492181E07142948
chr51649224716492310E07143210
chr51649242816493194E07143391
chr51649320216494179E07144165
chr51645588416456775E0726847
chr51645949116460044E07210454
chr51646284216462892E07213805
chr51646915416469296E07220117
chr51646934616469419E07220309
chr51649198516492181E07242948
chr51649224716492310E07243210
chr51649242816493194E07243391
chr51649320216494179E07244165
chr51645553116455769E0736494
chr51645588416456775E0736847
chr51645762616457909E0738589
chr51646195216462302E07312915
chr51646232816462423E07313291
chr51646284216462892E07313805
chr51649242816493194E07343391
chr51645492716455097E0745890
chr51645553116455769E0746494
chr51645588416456775E0746847
chr51646709916468429E07418062
chr51648927816489916E07440241
chr51649224716492310E07443210
chr51649242816493194E07443391
chr51649320216494179E07444165
chr51641159916411871E081-37166
chr51646125416461403E08112217
chr51646709916468429E08118062
chr51648927816489916E08140241
chr51645895116459172E0829914
chr51645949116460044E08210454
chr51646709916468429E08218062
chr51646915416469296E08220117
chr51646934616469419E08220309
chr51648682316487273E08237786
chr51648734616487473E08238309
chr51648927816489916E08240241










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr51646496016465306E06715923
chr51646530916466749E06716272
chr51646496016465306E06815923
chr51646530916466749E06816272
chr51646496016465306E06915923
chr51646530916466749E06916272
chr51646496016465306E07015923
chr51646530916466749E07016272
chr51646496016465306E07115923
chr51646530916466749E07116272
chr51646496016465306E07215923
chr51646530916466749E07216272
chr51646496016465306E07315923
chr51646530916466749E07316272
chr51646496016465306E07415923
chr51646530916466749E07416272
chr51646496016465306E08115923
chr51646530916466749E08116272
chr51646496016465306E08215923
chr51646530916466749E08216272