| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 19 | NC_000019.10:g.41020047G>A |
| GRCh37.p13 chr 19 | NC_000019.9:g.41525952G>A |
| CYP2B6 RefSeqGene | NG_007929.1:g.33749G>A |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.017 | A=0.983 |
| 1000Genomes | American | Sub | 694 | G=0.190 | A=0.810 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.326 | A=0.674 |
| 1000Genomes | Europe | Sub | 1006 | G=0.386 | A=0.614 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.215 | A=0.785 |
| 1000Genomes | South Asian | Sub | 978 | G=0.210 | A=0.790 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.413 | A=0.587 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.228 | A=0.771 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.395 | A=0.605 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
| 24885815 | Genetic variation in the CYP2B6 gene is related to circulating 2,2',4,4'-tetrabromodiphenyl ether (BDE-47) concentrations: an observational population-based study. | Penell J | Environ Health |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs1552223 | 0.000313 | alcohol dependence | 21314694 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value |
|---|---|---|---|---|
| cg27089200 | chr19:41531976 | -0.0464930966059394 | 5.5396e-10 |
There is no significant Hi-C chromatin interaction data for this SNP.