| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 12 | NC_000012.12:g.125768961G>A |
| GRCh37.p13 chr 12 | NC_000012.11:g.126253507G>A |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.298 | A=0.702 |
| 1000Genomes | American | Sub | 694 | G=0.530 | A=0.470 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.475 | A=0.525 |
| 1000Genomes | Europe | Sub | 1006 | G=0.429 | A=0.571 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.433 | A=0.567 |
| 1000Genomes | South Asian | Sub | 978 | G=0.510 | A=0.490 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.433 | A=0.567 |
| The Genome Aggregation Database | African | Sub | 8710 | G=0.331 | A=0.669 |
| The Genome Aggregation Database | American | Sub | 838 | G=0.560 | A=0.440 |
| The Genome Aggregation Database | East Asian | Sub | 1616 | G=0.461 | A=0.539 |
| The Genome Aggregation Database | Europe | Sub | 18448 | G=0.482 | A=0.517 |
| The Genome Aggregation Database | Global | Study-wide | 29910 | G=0.438 | A=0.561 |
| The Genome Aggregation Database | Other | Sub | 298 | G=0.400 | A=0.600 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.368 | A=0.631 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.446 | A=0.554 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs1558062 | 0.000674 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr12 | 126245482 | 126245532 | E070 | -7975 |
| chr12 | 126245644 | 126245694 | E070 | -7813 |
| chr12 | 126245939 | 126246068 | E070 | -7439 |
| chr12 | 126246096 | 126246194 | E070 | -7313 |
| chr12 | 126279063 | 126279221 | E070 | 25556 |
| chr12 | 126279313 | 126279381 | E070 | 25806 |
| chr12 | 126279063 | 126279221 | E071 | 25556 |
| chr12 | 126279313 | 126279381 | E071 | 25806 |
| chr12 | 126257654 | 126257957 | E081 | 4147 |