rs1560784

Homo sapiens
A>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0337 (10089/29880,GnomAD)
C=0334 (9748/29118,TOPMED)
C=0277 (1388/5008,1000G)
C=0351 (1352/3854,ALSPAC)
C=0365 (1353/3708,TWINSUK)
chr8:74891301 (GRCh38.p7) (8q21.13)
AD
GWASdb2
1   publication(s)
See rs on genome
10 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 8NC_000008.11:g.74891301A>C
GRCh37.p13 chr 8NC_000008.10:g.75803536A>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.679C=0.321
1000GenomesAmericanSub694A=0.730C=0.270
1000GenomesEast AsianSub1008A=0.890C=0.110
1000GenomesEuropeSub1006A=0.654C=0.346
1000GenomesGlobalStudy-wide5008A=0.723C=0.277
1000GenomesSouth AsianSub978A=0.670C=0.330
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.649C=0.351
The Genome Aggregation DatabaseAfricanSub8708A=0.674C=0.326
The Genome Aggregation DatabaseAmericanSub830A=0.710C=0.290
The Genome Aggregation DatabaseEast AsianSub1618A=0.881C=0.119
The Genome Aggregation DatabaseEuropeSub18422A=0.633C=0.366
The Genome Aggregation DatabaseGlobalStudy-wide29880A=0.662C=0.337
The Genome Aggregation DatabaseOtherSub302A=0.780C=0.220
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.665C=0.334
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.635C=0.365
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs15607841.31E-05alcohol consumption23743675

eQTL of rs1560784 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1560784 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr87580195775802064E070-1472
chr87580227575802866E070-670
chr87583530675835360E07031770
chr87583544675835509E07031910
chr87583554775835597E07032011
chr87583569775835988E07032161
chr87583544675835509E08231910
chr87583554775835597E08232011
chr87583569775835988E08232161
chr87583692975837010E08233393