Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 2 | NC_000002.12:g.195684712A>G |
GRCh37.p13 chr 2 | NC_000002.11:g.196549436A>G |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
SLC39A10 transcript variant 1 | NM_001127257.1:c. | N/A | Intron Variant |
SLC39A10 transcript variant 2 | NM_020342.2:c. | N/A | Intron Variant |
SLC39A10 transcript variant X1 | XM_005246689.4:c. | N/A | Intron Variant |
SLC39A10 transcript variant X2 | XM_011511504.2:c. | N/A | Intron Variant |
SLC39A10 transcript variant X4 | XM_011511505.2:c. | N/A | Intron Variant |
SLC39A10 transcript variant X3 | XM_011511506.2:c. | N/A | Intron Variant |
SLC39A10 transcript variant X5 | XM_011511507.2:c. | N/A | Intron Variant |
SLC39A10 transcript variant X6 | XM_017004522.1:c. | N/A | Intron Variant |
SLC39A10 transcript variant X7 | XM_017004523.1:c. | N/A | Genic Downstream Transcript Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.259 | G=0.741 |
1000Genomes | American | Sub | 694 | A=0.380 | G=0.620 |
1000Genomes | East Asian | Sub | 1008 | A=0.318 | G=0.682 |
1000Genomes | Europe | Sub | 1006 | A=0.265 | G=0.735 |
1000Genomes | Global | Study-wide | 5008 | A=0.324 | G=0.676 |
1000Genomes | South Asian | Sub | 978 | A=0.430 | G=0.570 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.255 | G=0.745 |
The Genome Aggregation Database | African | Sub | 8716 | A=0.274 | G=0.726 |
The Genome Aggregation Database | American | Sub | 838 | A=0.360 | G=0.640 |
The Genome Aggregation Database | East Asian | Sub | 1614 | A=0.351 | G=0.649 |
The Genome Aggregation Database | Europe | Sub | 18424 | A=0.273 | G=0.726 |
The Genome Aggregation Database | Global | Study-wide | 29894 | A=0.281 | G=0.718 |
The Genome Aggregation Database | Other | Sub | 302 | A=0.430 | G=0.570 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.244 | G=0.756 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs1561451 | 0.0000886 | alcoholism | pha002892 |
rs1561451 | 0.000089 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue |
---|---|---|---|---|---|---|
Chr2:196549436 | SLC39A10 | ENSG00000196950.9 | A>G | 9.2991e-9 | 108735 | Cerebellum |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr2 | 196530924 | 196531064 | E067 | -18372 |
chr2 | 196531147 | 196531249 | E067 | -18187 |
chr2 | 196552291 | 196552796 | E067 | 2855 |
chr2 | 196571743 | 196571934 | E067 | 22307 |
chr2 | 196531147 | 196531249 | E068 | -18187 |
chr2 | 196551759 | 196551919 | E068 | 2323 |
chr2 | 196552291 | 196552796 | E068 | 2855 |
chr2 | 196532763 | 196532990 | E069 | -16446 |
chr2 | 196530924 | 196531064 | E070 | -18372 |
chr2 | 196531147 | 196531249 | E070 | -18187 |
chr2 | 196551398 | 196551453 | E070 | 1962 |
chr2 | 196551579 | 196551657 | E070 | 2143 |
chr2 | 196551759 | 196551919 | E070 | 2323 |
chr2 | 196552291 | 196552796 | E070 | 2855 |
chr2 | 196532763 | 196532990 | E071 | -16446 |
chr2 | 196552291 | 196552796 | E071 | 2855 |
chr2 | 196530924 | 196531064 | E073 | -18372 |
chr2 | 196531147 | 196531249 | E073 | -18187 |
chr2 | 196530924 | 196531064 | E074 | -18372 |
chr2 | 196531147 | 196531249 | E074 | -18187 |
chr2 | 196526812 | 196526862 | E081 | -22574 |
chr2 | 196527010 | 196527154 | E081 | -22282 |
chr2 | 196527701 | 196527853 | E081 | -21583 |
chr2 | 196527862 | 196528001 | E081 | -21435 |
chr2 | 196528041 | 196528150 | E081 | -21286 |
chr2 | 196531147 | 196531249 | E081 | -18187 |
chr2 | 196552291 | 196552796 | E082 | 2855 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr2 | 196520779 | 196524508 | E067 | -24928 |
chr2 | 196520779 | 196524508 | E068 | -24928 |
chr2 | 196520779 | 196524508 | E069 | -24928 |
chr2 | 196520779 | 196524508 | E070 | -24928 |
chr2 | 196520779 | 196524508 | E071 | -24928 |
chr2 | 196520779 | 196524508 | E072 | -24928 |
chr2 | 196520779 | 196524508 | E073 | -24928 |
chr2 | 196520779 | 196524508 | E074 | -24928 |
chr2 | 196520779 | 196524508 | E081 | -24928 |
chr2 | 196520779 | 196524508 | E082 | -24928 |