SNP Detail Info-rs1563188

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0382 (11440/29896,GnomAD)
G=0333 (9699/29118,TOPMED)
G=0305 (1526/5008,1000G)
G=0465 (1791/3854,ALSPAC)
G=0445 (1651/3708,TWINSUK)

Position: chr18:1738360 (GRCh38.p7) (18p11.32)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 18	NC_000018.10:g.1738360A>G
GRCh37.p13 chr 18	NC_000018.9:g.1738361A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.813	G=0.187
1000Genomes	American	Sub	694	A=0.740	G=0.260
1000Genomes	East Asian	Sub	1008	A=0.698	G=0.302
1000Genomes	Europe	Sub	1006	A=0.542	G=0.458
1000Genomes	Global	Study-wide	5008	A=0.695	G=0.305
1000Genomes	South Asian	Sub	978	A=0.660	G=0.340
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.535	G=0.465
The Genome Aggregation Database	African	Sub	8716	A=0.786	G=0.214
The Genome Aggregation Database	American	Sub	836	A=0.750	G=0.250
The Genome Aggregation Database	East Asian	Sub	1598	A=0.723	G=0.277
The Genome Aggregation Database	Europe	Sub	18444	A=0.523	G=0.476
The Genome Aggregation Database	Global	Study-wide	29896	A=0.617	G=0.382
The Genome Aggregation Database	Other	Sub	302	A=0.510	G=0.490
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.666	G=0.333
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.555	G=0.445

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs1563188	0.000348	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs1563188