rs1563551

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0361 (10756/29780,GnomAD)
G=0341 (9939/29118,TOPMED)
G=0337 (1689/5008,1000G)
G=0369 (1421/3854,ALSPAC)
G=0373 (1382/3708,TWINSUK)
chr5:83726007 (GRCh38.p7) (5q14.3)
AD
GWASdb2
1   publication(s)
See rs on genome
18 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.83726007A>G
GRCh37.p13 chr 5NC_000005.9:g.83021826A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.665G=0.335
1000GenomesAmericanSub694A=0.730G=0.270
1000GenomesEast AsianSub1008A=0.609G=0.391
1000GenomesEuropeSub1006A=0.662G=0.338
1000GenomesGlobalStudy-wide5008A=0.663G=0.337
1000GenomesSouth AsianSub978A=0.670G=0.330
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.631G=0.369
The Genome Aggregation DatabaseAfricanSub8710A=0.656G=0.344
The Genome Aggregation DatabaseAmericanSub832A=0.730G=0.270
The Genome Aggregation DatabaseEast AsianSub1616A=0.578G=0.422
The Genome Aggregation DatabaseEuropeSub18320A=0.632G=0.367
The Genome Aggregation DatabaseGlobalStudy-wide29780A=0.638G=0.361
The Genome Aggregation DatabaseOtherSub302A=0.620G=0.380
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.658G=0.341
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.627G=0.373
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs15635510.000497alcohol dependence20201924

eQTL of rs1563551 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1563551 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr58298374282983827E070-37999
chr58298394082984466E070-37360
chr58298454482984626E070-37200
chr58298471182984854E070-36972
chr58301046183011116E070-10710
chr58301112083011573E070-10253
chr58298394082984466E081-37360
chr58298454482984626E081-37200
chr58298471182984854E081-36972
chr58301046183011116E081-10710
chr58301112083011573E081-10253
chr58302435383024729E0812527
chr58298216482982442E082-39384
chr58298309682983339E082-38487
chr58298374282983827E082-37999
chr58298394082984466E082-37360
chr58298454482984626E082-37200
chr58298471182984854E082-36972



Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr58301660483018653E067-3173
chr58301660483018653E068-3173
chr58301660483018653E069-3173
chr58301660483018653E070-3173
chr58301660483018653E071-3173
chr58301660483018653E072-3173
chr58301660483018653E073-3173
chr58301660483018653E074-3173
chr58301660483018653E081-3173
chr58301660483018653E082-3173