rs1563749

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0381 (11434/29938,GnomAD)
T=0475 (13830/29118,TOPMED)
T=0462 (2315/5008,1000G)
T=0214 (825/3854,ALSPAC)
T=0225 (834/3708,TWINSUK)
chr4:18070877 (GRCh38.p7) (4p15.31)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.18070877C>T
GRCh37.p13 chr 4NC_000004.11:g.18072500C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.155T=0.845
1000GenomesAmericanSub694C=0.620T=0.380
1000GenomesEast AsianSub1008C=0.496T=0.504
1000GenomesEuropeSub1006C=0.777T=0.223
1000GenomesGlobalStudy-wide5008C=0.538T=0.462
1000GenomesSouth AsianSub978C=0.790T=0.210
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.786T=0.214
The Genome Aggregation DatabaseAfricanSub8714C=0.246T=0.754
The Genome Aggregation DatabaseAmericanSub838C=0.640T=0.360
The Genome Aggregation DatabaseEast AsianSub1606C=0.472T=0.528
The Genome Aggregation DatabaseEuropeSub18478C=0.802T=0.197
The Genome Aggregation DatabaseGlobalStudy-wide29938C=0.618T=0.381
The Genome Aggregation DatabaseOtherSub302C=0.780T=0.220
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.525T=0.475
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.775T=0.225
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs15637497.7E-05alcoholism (heaviness of drinking)21529783

eQTL of rs1563749 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1563749 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.