rs1564032

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0157 (4721/29890,GnomAD)
T==0152 (4425/29116,TOPMED)
T==0094 (470/5008,1000G)
T==0206 (792/3854,ALSPAC)
T==0216 (801/3708,TWINSUK)
chr2:6389372 (GRCh38.p7) (2p25.2)
AD
GWASdb2
1   publication(s)
See rs on genome
20 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.6389372T>C
GRCh37.p13 chr 2NC_000002.11:g.6529504T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.113C=0.887
1000GenomesAmericanSub694T=0.080C=0.920
1000GenomesEast AsianSub1008T=0.007C=0.993
1000GenomesEuropeSub1006T=0.198C=0.802
1000GenomesGlobalStudy-wide5008T=0.094C=0.906
1000GenomesSouth AsianSub978T=0.060C=0.940
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.206C=0.794
The Genome Aggregation DatabaseAfricanSub8704T=0.129C=0.871
The Genome Aggregation DatabaseAmericanSub836T=0.080C=0.920
The Genome Aggregation DatabaseEast AsianSub1620T=0.012C=0.988
The Genome Aggregation DatabaseEuropeSub18430T=0.189C=0.810
The Genome Aggregation DatabaseGlobalStudy-wide29890T=0.157C=0.842
The Genome Aggregation DatabaseOtherSub300T=0.070C=0.930
Trans-Omics for Precision MedicineGlobalStudy-wide29116T=0.152C=0.848
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.216C=0.784
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs15640320.00066alcohol dependence20201924

eQTL of rs1564032 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1564032 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr264857026485984E070-43520
chr264987626498967E070-30537
chr264993036499384E070-30120
chr264996086499855E070-29649
chr265001736500333E070-29171
chr265110126511120E071-18384
chr265110126511120E074-18384
chr264987626498967E081-30537
chr264993036499384E081-30120
chr264996086499855E081-29649
chr265001736500333E081-29171
chr265638266564093E08134322
chr265642166564384E08134712
chr265645436564611E08135039
chr264985106498603E082-30901
chr264987626498967E082-30537
chr264993036499384E082-30120
chr265613786561428E08231874
chr265638266564093E08234322
chr265642166564384E08234712