SNP Detail Info-rs1567479

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0224 (6694/29876,GnomAD)
A=0230 (6720/29118,TOPMED)
A=0177 (886/5008,1000G)
A=0170 (654/3854,ALSPAC)
A=0191 (707/3708,TWINSUK)

Position: chr4:178386739 (GRCh38.p7) (4q34.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 4	NC_000004.12:g.178386739G>A
GRCh37.p13 chr 4	NC_000004.11:g.179307893G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.673	A=0.327
1000Genomes	American	Sub	694	G=0.890	A=0.110
1000Genomes	East Asian	Sub	1008	G=0.973	A=0.027
1000Genomes	Europe	Sub	1006	G=0.794	A=0.206
1000Genomes	Global	Study-wide	5008	G=0.823	A=0.177
1000Genomes	South Asian	Sub	978	G=0.850	A=0.150
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.830	A=0.170
The Genome Aggregation Database	African	Sub	8706	G=0.693	A=0.307
The Genome Aggregation Database	American	Sub	828	G=0.900	A=0.100
The Genome Aggregation Database	East Asian	Sub	1600	G=0.957	A=0.043
The Genome Aggregation Database	Europe	Sub	18442	G=0.793	A=0.206
The Genome Aggregation Database	Global	Study-wide	29876	G=0.775	A=0.224
The Genome Aggregation Database	Other	Sub	300	G=0.800	A=0.200
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.769	A=0.230
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.809	A=0.191

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs1567479	0.000633	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs1567479