rs1568447

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
C==0467 (13962/29882,GnomAD)
T=0480 (13992/29118,TOPMED)
T=0417 (2087/5008,1000G)
C==0375 (1445/3854,ALSPAC)
C==0361 (1339/3708,TWINSUK)
chr17:74840873 (GRCh38.p7) (17q25.1)
AD
GWASdb2
3   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 17NC_000017.11:g.74840873C>T
GRCh37.p13 chr 17NC_000017.10:g.72837012C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.699T=0.301
1000GenomesAmericanSub694C=0.420T=0.580
1000GenomesEast AsianSub1008C=0.732T=0.268
1000GenomesEuropeSub1006C=0.403T=0.597
1000GenomesGlobalStudy-wide5008C=0.583T=0.417
1000GenomesSouth AsianSub978C=0.580T=0.420
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.375T=0.625
The Genome Aggregation DatabaseAfricanSub8700C=0.669T=0.331
The Genome Aggregation DatabaseAmericanSub838C=0.420T=0.580
The Genome Aggregation DatabaseEast AsianSub1614C=0.752T=0.248
The Genome Aggregation DatabaseEuropeSub18428C=0.347T=0.652
The Genome Aggregation DatabaseGlobalStudy-wide29882C=0.467T=0.532
The Genome Aggregation DatabaseOtherSub302C=0.560T=0.440
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.519T=0.480
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.361T=0.639
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res
18444252Neurotransmission and bipolar disorder: a systematic family-based association study.Shi JAm J Med Genet B Neuropsychiatr Genet
23691058Dosage transmission disequilibrium test (dTDT) for linkage and association detection.Zhang ZPLoS One

P-Value

SNP ID p-value Traits Study
rs15684470.00000408alcohol dependence23691058
rs15684470.00071alcohol dependence20201924

eQTL of rs1568447 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1568447 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr177280335672803406E067-33606
chr177280353972803873E067-33139
chr177280417772804390E067-32622
chr177280444972804727E067-32285
chr177280497472805029E067-31983
chr177280624572806407E067-30605
chr177280660572806672E067-30340
chr177280671572806853E067-30159
chr177280687072807137E067-29875
chr177280716972807499E067-29513
chr177280825172808713E067-28299
chr177280878572809249E067-27763
chr177280928272809459E067-27553
chr177280946572809552E067-27460
chr177280993772810085E067-26927
chr177281152572811636E067-25376
chr177281170072811980E067-25032
chr177281201572812109E067-24903
chr177281216972812442E067-24570
chr177281693372817003E067-20009
chr177281717772817263E067-19749
chr177281738372817433E067-19579
chr177281743472817488E067-19524
chr177281750172817572E067-19440
chr177281765472817726E067-19286
chr177281782872817878E067-19134
chr177281796572818100E067-18912
chr177281828572818355E067-18657
chr177281836372818437E067-18575
chr177281851472818747E067-18265
chr177281877772818834E067-18178
chr177281973572819794E067-17218
chr177281986072819920E067-17092
chr177282005372820103E067-16909
chr177282013472820174E067-16838
chr177282022672820451E067-16561
chr177282051772820826E067-16186
chr177282085272821007E067-16005
chr177282108272821287E067-15725
chr177282136772821452E067-15560
chr177282159272821642E067-15370
chr177282166772821861E067-15151
chr177282190572821965E067-15047
chr177282214172822416E067-14596
chr177283704572837739E06733
chr177283774072838106E067728
chr177283816472839396E0671152
chr177285208672852196E06715074
chr177285221872852383E06715206
chr177286789372868134E06730881
chr177279120372791302E068-45710
chr177280305872803108E068-33904
chr177280335672803406E068-33606
chr177280353972803873E068-33139
chr177280417772804390E068-32622
chr177280444972804727E068-32285
chr177280497472805029E068-31983
chr177280503372805191E068-31821
chr177280527072805427E068-31585
chr177280624572806407E068-30605
chr177280660572806672E068-30340
chr177280671572806853E068-30159
chr177280687072807137E068-29875
chr177280716972807499E068-29513
chr177280928272809459E068-27553
chr177280946572809552E068-27460
chr177280993772810085E068-26927
chr177281693372817003E068-20009
chr177281717772817263E068-19749
chr177281738372817433E068-19579
chr177281743472817488E068-19524
chr177281750172817572E068-19440
chr177281765472817726E068-19286
chr177281782872817878E068-19134
chr177281796572818100E068-18912
chr177281828572818355E068-18657
chr177281836372818437E068-18575
chr177281851472818747E068-18265
chr177281877772818834E068-18178
chr177281884072819046E068-17966
chr177281907472819673E068-17339
chr177281973572819794E068-17218
chr177281986072819920E068-17092
chr177282005372820103E068-16909
chr177282013472820174E068-16838
chr177282022672820451E068-16561
chr177282051772820826E068-16186
chr177282085272821007E068-16005
chr177282108272821287E068-15725
chr177282136772821452E068-15560
chr177282159272821642E068-15370
chr177282166772821861E068-15151
chr177282190572821965E068-15047
chr177282214172822416E068-14596
chr177282259172822787E068-14225
chr177282315872823224E068-13788
chr177282335672823436E068-13576
chr177282832472828404E068-8608
chr177282865472828803E068-8209
chr177282883072828914E068-8098
chr177282904072829099E068-7913
chr177282930072829350E068-7662
chr177282956972829981E068-7031
chr177283608372837037E0680
chr177283704572837739E06833
chr177283774072838106E068728
chr177283816472839396E0681152
chr177279120372791302E069-45710
chr177279195672792016E069-44996
chr177279621172796261E069-40751
chr177279629872796352E069-40660
chr177280353972803873E069-33139
chr177280417772804390E069-32622
chr177280444972804727E069-32285
chr177280497472805029E069-31983
chr177280503372805191E069-31821
chr177280624572806407E069-30605
chr177280660572806672E069-30340
chr177280671572806853E069-30159
chr177280687072807137E069-29875
chr177280716972807499E069-29513
chr177280825172808713E069-28299
chr177280878572809249E069-27763
chr177280928272809459E069-27553
chr177280946572809552E069-27460
chr177280993772810085E069-26927
chr177281128972811411E069-25601
chr177281152572811636E069-25376
chr177281170072811980E069-25032
chr177281201572812109E069-24903
chr177281216972812442E069-24570
chr177281693372817003E069-20009
chr177281717772817263E069-19749
chr177281738372817433E069-19579
chr177281743472817488E069-19524
chr177281750172817572E069-19440
chr177281765472817726E069-19286
chr177281782872817878E069-19134
chr177281796572818100E069-18912
chr177281828572818355E069-18657
chr177281836372818437E069-18575
chr177281851472818747E069-18265
chr177281877772818834E069-18178
chr177281884072819046E069-17966
chr177281907472819673E069-17339
chr177281973572819794E069-17218
chr177281986072819920E069-17092
chr177282005372820103E069-16909
chr177282013472820174E069-16838
chr177282022672820451E069-16561
chr177282051772820826E069-16186
chr177282085272821007E069-16005
chr177282108272821287E069-15725
chr177282136772821452E069-15560
chr177282159272821642E069-15370
chr177282166772821861E069-15151
chr177282190572821965E069-15047
chr177282214172822416E069-14596
chr177283608372837037E0690
chr177283704572837739E06933
chr177283774072838106E069728
chr177283816472839396E0691152
chr177285221872852383E06915206
chr177285296872853008E06915956
chr177286064272861866E06923630
chr177286724972867874E06930237
chr177286789372868134E06930881
chr177280166072802121E070-34891
chr177280305872803108E070-33904
chr177280335672803406E070-33606
chr177280353972803873E070-33139
chr177280444972804727E070-32285
chr177281796572818100E070-18912
chr177281828572818355E070-18657
chr177281836372818437E070-18575
chr177281851472818747E070-18265
chr177281877772818834E070-18178
chr177281884072819046E070-17966
chr177281907472819673E070-17339
chr177281973572819794E070-17218
chr177281986072819920E070-17092
chr177282005372820103E070-16909
chr177282013472820174E070-16838
chr177282022672820451E070-16561
chr177282051772820826E070-16186
chr177282085272821007E070-16005
chr177282108272821287E070-15725
chr177282136772821452E070-15560
chr177282159272821642E070-15370
chr177282166772821861E070-15151
chr177282190572821965E070-15047
chr177282214172822416E070-14596
chr177283562372835690E070-1322
chr177283608372837037E0700
chr177283704572837739E07033
chr177283774072838106E070728
chr177283816472839396E0701152
chr177285208672852196E07015074
chr177286789372868134E07030881
chr177278722172787261E071-49751
chr177278732872788032E071-48980
chr177279120372791302E071-45710
chr177279195672792016E071-44996
chr177280335672803406E071-33606
chr177280353972803873E071-33139
chr177280417772804390E071-32622
chr177280444972804727E071-32285
chr177280497472805029E071-31983
chr177280503372805191E071-31821
chr177280527072805427E071-31585
chr177280598372806023E071-30989
chr177280624572806407E071-30605
chr177280660572806672E071-30340
chr177280671572806853E071-30159
chr177280687072807137E071-29875
chr177280716972807499E071-29513
chr177280825172808713E071-28299
chr177280878572809249E071-27763
chr177280928272809459E071-27553
chr177280946572809552E071-27460
chr177280993772810085E071-26927
chr177281072172810828E071-26184
chr177281170072811980E071-25032
chr177281201572812109E071-24903
chr177281216972812442E071-24570
chr177281660172816701E071-20311
chr177281693372817003E071-20009
chr177281717772817263E071-19749
chr177281738372817433E071-19579
chr177281743472817488E071-19524
chr177281750172817572E071-19440
chr177281765472817726E071-19286
chr177281782872817878E071-19134
chr177281796572818100E071-18912
chr177281828572818355E071-18657
chr177281836372818437E071-18575
chr177281851472818747E071-18265
chr177281877772818834E071-18178
chr177281884072819046E071-17966
chr177281907472819673E071-17339
chr177281986072819920E071-17092
chr177282005372820103E071-16909
chr177282013472820174E071-16838
chr177282022672820451E071-16561
chr177282051772820826E071-16186
chr177282085272821007E071-16005
chr177282108272821287E071-15725
chr177282136772821452E071-15560
chr177282159272821642E071-15370
chr177282166772821861E071-15151
chr177282190572821965E071-15047
chr177282214172822416E071-14596
chr177282259172822787E071-14225
chr177282315872823224E071-13788
chr177283008372830717E071-6295
chr177283074872830947E071-6065
chr177283336272833438E071-3574
chr177283346172833544E071-3468
chr177283363472833689E071-3323
chr177283372572833781E071-3231
chr177283388272833976E071-3036
chr177283608372837037E0710
chr177283704572837739E07133
chr177283774072838106E071728
chr177285208672852196E07115074
chr177285221872852383E07115206
chr177286724972867874E07130237
chr177286789372868134E07130881
chr177287902072879356E07142008
chr177288471472884928E07147702
chr177288497072885029E07147958
chr177279120372791302E072-45710
chr177279195672792016E072-44996
chr177279612172796161E072-40851
chr177279621172796261E072-40751
chr177279629872796352E072-40660
chr177279951772799706E072-37306
chr177280335672803406E072-33606
chr177280353972803873E072-33139
chr177280417772804390E072-32622
chr177280444972804727E072-32285
chr177280497472805029E072-31983
chr177280503372805191E072-31821
chr177280527072805427E072-31585
chr177280598372806023E072-30989
chr177280624572806407E072-30605
chr177280660572806672E072-30340
chr177280671572806853E072-30159
chr177280687072807137E072-29875
chr177280716972807499E072-29513
chr177280825172808713E072-28299
chr177280878572809249E072-27763
chr177280928272809459E072-27553
chr177280946572809552E072-27460
chr177280993772810085E072-26927
chr177281072172810828E072-26184
chr177281201572812109E072-24903
chr177281216972812442E072-24570
chr177281245572812546E072-24466
chr177281738372817433E072-19579
chr177281743472817488E072-19524
chr177281750172817572E072-19440
chr177281765472817726E072-19286
chr177281828572818355E072-18657
chr177281836372818437E072-18575
chr177281851472818747E072-18265
chr177281877772818834E072-18178
chr177281884072819046E072-17966
chr177281907472819673E072-17339
chr177281973572819794E072-17218
chr177281986072819920E072-17092
chr177282005372820103E072-16909
chr177282013472820174E072-16838
chr177282022672820451E072-16561
chr177282051772820826E072-16186
chr177282085272821007E072-16005
chr177282108272821287E072-15725
chr177282136772821452E072-15560
chr177282159272821642E072-15370
chr177282166772821861E072-15151
chr177282190572821965E072-15047
chr177282214172822416E072-14596
chr177282259172822787E072-14225
chr177282315872823224E072-13788
chr177282335672823436E072-13576
chr177283008372830717E072-6295
chr177283074872830947E072-6065
chr177283704572837739E07233
chr177283774072838106E072728
chr177283816472839396E0721152
chr177285208672852196E07215074
chr177285221872852383E07215206
chr177286789372868134E07230881
chr177279621172796261E073-40751
chr177279629872796352E073-40660
chr177280417772804390E073-32622
chr177280444972804727E073-32285
chr177280624572806407E073-30605
chr177280660572806672E073-30340
chr177280671572806853E073-30159
chr177280687072807137E073-29875
chr177280716972807499E073-29513
chr177280825172808713E073-28299
chr177280878572809249E073-27763
chr177280928272809459E073-27553
chr177281201572812109E073-24903
chr177281216972812442E073-24570
chr177281717772817263E073-19749
chr177281738372817433E073-19579
chr177281743472817488E073-19524
chr177281750172817572E073-19440
chr177281765472817726E073-19286
chr177281782872817878E073-19134
chr177281796572818100E073-18912
chr177281828572818355E073-18657
chr177281836372818437E073-18575
chr177281907472819673E073-17339
chr177281973572819794E073-17218
chr177281986072819920E073-17092
chr177282005372820103E073-16909
chr177282013472820174E073-16838
chr177282022672820451E073-16561
chr177282051772820826E073-16186
chr177282085272821007E073-16005
chr177282108272821287E073-15725
chr177282136772821452E073-15560
chr177282159272821642E073-15370
chr177282166772821861E073-15151
chr177282190572821965E073-15047
chr177282214172822416E073-14596
chr177282259172822787E073-14225
chr177282315872823224E073-13788
chr177283074872830947E073-6065
chr177283103472831150E073-5862
chr177283363472833689E073-3323
chr177283372572833781E073-3231
chr177283388272833976E073-3036
chr177283418572834235E073-2777
chr177283704572837739E07333
chr177283774072838106E073728
chr177283816472839396E0731152
chr177286724972867874E07330237
chr177279120372791302E074-45710
chr177279195672792016E074-44996
chr177280335672803406E074-33606
chr177280353972803873E074-33139
chr177280417772804390E074-32622
chr177280444972804727E074-32285
chr177280497472805029E074-31983
chr177280624572806407E074-30605
chr177280660572806672E074-30340
chr177280671572806853E074-30159
chr177280687072807137E074-29875
chr177280716972807499E074-29513
chr177280825172808713E074-28299
chr177280878572809249E074-27763
chr177280928272809459E074-27553
chr177280946572809552E074-27460
chr177280993772810085E074-26927
chr177281072172810828E074-26184
chr177281087372810977E074-26035
chr177281099372811081E074-25931
chr177281113772811213E074-25799
chr177281128972811411E074-25601
chr177281693372817003E074-20009
chr177281717772817263E074-19749
chr177281738372817433E074-19579
chr177281743472817488E074-19524
chr177281750172817572E074-19440
chr177281765472817726E074-19286
chr177281782872817878E074-19134
chr177281796572818100E074-18912
chr177281828572818355E074-18657
chr177281836372818437E074-18575
chr177281851472818747E074-18265
chr177281877772818834E074-18178
chr177281884072819046E074-17966
chr177281907472819673E074-17339
chr177281973572819794E074-17218
chr177281986072819920E074-17092
chr177282005372820103E074-16909
chr177282013472820174E074-16838
chr177282022672820451E074-16561
chr177282051772820826E074-16186
chr177282085272821007E074-16005
chr177282108272821287E074-15725
chr177282136772821452E074-15560
chr177282159272821642E074-15370
chr177282166772821861E074-15151
chr177282190572821965E074-15047
chr177282214172822416E074-14596
chr177282956972829981E074-7031
chr177283008372830717E074-6295
chr177283608372837037E0740
chr177283704572837739E07433
chr177283774072838106E074728
chr177283816472839396E0741152
chr177286789372868134E07430881
chr177280010872800473E081-36539
chr177280135772801405E081-35607
chr177280151972801620E081-35392
chr177280166072802121E081-34891
chr177280305872803108E081-33904
chr177280335672803406E081-33606
chr177280353972803873E081-33139
chr177280417772804390E081-32622
chr177280444972804727E081-32285
chr177280497472805029E081-31983
chr177280503372805191E081-31821
chr177280825172808713E081-28299
chr177280878572809249E081-27763
chr177280928272809459E081-27553
chr177280946572809552E081-27460
chr177280993772810085E081-26927
chr177281738372817433E081-19579
chr177281743472817488E081-19524
chr177281750172817572E081-19440
chr177281765472817726E081-19286
chr177281782872817878E081-19134
chr177281796572818100E081-18912
chr177281828572818355E081-18657
chr177281836372818437E081-18575
chr177281851472818747E081-18265
chr177281877772818834E081-18178
chr177281884072819046E081-17966
chr177281907472819673E081-17339
chr177281973572819794E081-17218
chr177281986072819920E081-17092
chr177282005372820103E081-16909
chr177282013472820174E081-16838
chr177282022672820451E081-16561
chr177282051772820826E081-16186
chr177282085272821007E081-16005
chr177282108272821287E081-15725
chr177282136772821452E081-15560
chr177282159272821642E081-15370
chr177282166772821861E081-15151
chr177282190572821965E081-15047
chr177282214172822416E081-14596
chr177282259172822787E081-14225
chr177282315872823224E081-13788
chr177283608372837037E0810
chr177283704572837739E08133
chr177283774072838106E081728
chr177283816472839396E0811152
chr177285208672852196E08115074
chr177285221872852383E08115206
chr177285246772852588E08115455
chr177285296872853008E08115956
chr177285335372853519E08116341
chr177285357072853714E08116558
chr177285386772853935E08116855
chr177286789372868134E08130881
chr177287153072872515E08134518
chr177287253872872645E08135526
chr177280305872803108E082-33904
chr177280335672803406E082-33606
chr177280353972803873E082-33139
chr177280417772804390E082-32622
chr177280444972804727E082-32285
chr177280497472805029E082-31983
chr177280825172808713E082-28299
chr177280878572809249E082-27763
chr177280928272809459E082-27553
chr177280946572809552E082-27460
chr177280993772810085E082-26927
chr177281782872817878E082-19134
chr177281796572818100E082-18912
chr177281828572818355E082-18657
chr177281836372818437E082-18575
chr177282005372820103E082-16909
chr177282013472820174E082-16838
chr177282022672820451E082-16561
chr177282051772820826E082-16186
chr177282085272821007E082-16005
chr177282108272821287E082-15725
chr177282136772821452E082-15560
chr177282159272821642E082-15370
chr177282166772821861E082-15151
chr177282190572821965E082-15047
chr177282214172822416E082-14596
chr177282259172822787E082-14225
chr177283704572837739E08233
chr177283774072838106E082728
chr177283816472839396E0821152
chr177285208672852196E08215074
chr177285221872852383E08215206
chr177285246772852588E08215455
chr177285296872853008E08215956
chr177285335372853519E08216341
chr177285357072853714E08216558
chr177287135472871420E08234342
chr177287153072872515E08234518
chr177287253872872645E08235526










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr177286815372870509E06731141
chr177285565072855757E06818638
chr177285750372857569E06820491
chr177286815372870509E06831141
chr177285565072855757E06918638
chr177285583772857502E06918825
chr177286815372870509E06931141
chr177284844672849301E07011434
chr177286815372870509E07031141
chr177285565072855757E07118638
chr177286815372870509E07131141
chr177285565072855757E07218638
chr177285583772857502E07218825
chr177286815372870509E07231141
chr177285565072855757E07318638
chr177285583772857502E07318825
chr177285750372857569E07320491
chr177286815372870509E07331141
chr177286815372870509E07431141
chr177284844672849301E08211434
chr177285565072855757E08218638
chr177285583772857502E08218825
chr177285750372857569E08220491
chr177286815372870509E08231141