rs1568548

Homo sapiens
G>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0122 (3673/29922,GnomAD)
C=0152 (4428/29118,TOPMED)
C=0117 (587/5008,1000G)
C=0103 (397/3854,ALSPAC)
C=0104 (385/3708,TWINSUK)
chr13:87096798 (GRCh38.p7) (13q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
9 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.87096798G>C
GRCh37.p13 chr 13NC_000013.10:g.87749053G>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.785C=0.215
1000GenomesAmericanSub694G=0.910C=0.090
1000GenomesEast AsianSub1008G=0.968C=0.032
1000GenomesEuropeSub1006G=0.906C=0.094
1000GenomesGlobalStudy-wide5008G=0.883C=0.117
1000GenomesSouth AsianSub978G=0.880C=0.120
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.897C=0.103
The Genome Aggregation DatabaseAfricanSub8702G=0.782C=0.218
The Genome Aggregation DatabaseAmericanSub838G=0.920C=0.080
The Genome Aggregation DatabaseEast AsianSub1616G=0.954C=0.046
The Genome Aggregation DatabaseEuropeSub18464G=0.913C=0.086
The Genome Aggregation DatabaseGlobalStudy-wide29922G=0.877C=0.122
The Genome Aggregation DatabaseOtherSub302G=0.850C=0.150
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.847C=0.152
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.896C=0.104
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs15685480.000118alcohol consumption23743675

eQTL of rs1568548 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1568548 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr138778075187780970E07031698
chr138778099087781070E07031937
chr138778113987781194E07032086
chr138778136187781523E07032308
chr138778160987781698E07032556
chr138778189787782225E07032844
chr138778224887782420E07033195
chr138778273087782844E07033677
chr138778399687784117E07034943