rs1568549

Homo sapiens
A>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0123 (3686/29960,GnomAD)
T=0152 (4426/29118,TOPMED)
T=0117 (587/5008,1000G)
T=0104 (399/3854,ALSPAC)
T=0104 (385/3708,TWINSUK)
chr13:87096963 (GRCh38.p7) (13q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
9 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.87096963A>T
GRCh37.p13 chr 13NC_000013.10:g.87749218A>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.785T=0.215
1000GenomesAmericanSub694A=0.910T=0.090
1000GenomesEast AsianSub1008A=0.968T=0.032
1000GenomesEuropeSub1006A=0.906T=0.094
1000GenomesGlobalStudy-wide5008A=0.883T=0.117
1000GenomesSouth AsianSub978A=0.880T=0.120
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.896T=0.104
The Genome Aggregation DatabaseAfricanSub8724A=0.781T=0.219
The Genome Aggregation DatabaseAmericanSub836A=0.920T=0.080
The Genome Aggregation DatabaseEast AsianSub1618A=0.954T=0.046
The Genome Aggregation DatabaseEuropeSub18480A=0.913T=0.086
The Genome Aggregation DatabaseGlobalStudy-wide29960A=0.877T=0.123
The Genome Aggregation DatabaseOtherSub302A=0.850T=0.150
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.848T=0.152
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.896T=0.104
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs15685490.000118alcohol consumption23743675

eQTL of rs1568549 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1568549 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr138778075187780970E07031533
chr138778099087781070E07031772
chr138778113987781194E07031921
chr138778136187781523E07032143
chr138778160987781698E07032391
chr138778189787782225E07032679
chr138778224887782420E07033030
chr138778273087782844E07033512
chr138778399687784117E07034778