SNP Detail Info-rs1569332

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

LOC105375626 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0282 (8449/29894,GnomAD)
A=0283 (8251/29118,TOPMED)
A=0318 (1594/5008,1000G)
A=0284 (1095/3854,ALSPAC)
A=0283 (1051/3708,TWINSUK)

Position: chr8:87622477 (GRCh38.p7) (8q21.3)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 8	NC_000008.11:g.87622477G>A
GRCh37.p13 chr 8	NC_000008.10:g.88634705G>A

Molecule type	Change	Amino acid[Codon]	SO Term
LOC105375626 transcript	XR_928380.2:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.733	A=0.267
1000Genomes	American	Sub	694	G=0.750	A=0.250
1000Genomes	East Asian	Sub	1008	G=0.644	A=0.356
1000Genomes	Europe	Sub	1006	G=0.699	A=0.301
1000Genomes	Global	Study-wide	5008	G=0.682	A=0.318
1000Genomes	South Asian	Sub	978	G=0.590	A=0.410
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.716	A=0.284
The Genome Aggregation Database	African	Sub	8702	G=0.714	A=0.286
The Genome Aggregation Database	American	Sub	834	G=0.770	A=0.230
The Genome Aggregation Database	East Asian	Sub	1604	G=0.613	A=0.387
The Genome Aggregation Database	Europe	Sub	18452	G=0.725	A=0.275
The Genome Aggregation Database	Global	Study-wide	29894	G=0.717	A=0.282
The Genome Aggregation Database	Other	Sub	302	G=0.760	A=0.240
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.716	A=0.283
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.717	A=0.283

PMID	Title	Author	Journal
17158188	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Bierut LJ	Hum Mol Genet

SNP ID	p-value	Traits	Study
rs1569332	0.000173	nicotine dependence	17158188

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs1569332