rs1579237

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0407 (12170/29876,GnomAD)
C=0354 (10325/29118,TOPMED)
C=0459 (2300/5008,1000G)
C=0455 (1752/3854,ALSPAC)
C=0456 (1692/3708,TWINSUK)
chr16:52799510 (GRCh38.p7) (16q12.2)
AD
GWASdb2
1   publication(s)
See rs on genome
59 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.52799510T>C
GRCh37.p13 chr 16NC_000016.9:g.52833422T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.852C=0.148
1000GenomesAmericanSub694T=0.370C=0.630
1000GenomesEast AsianSub1008T=0.270C=0.730
1000GenomesEuropeSub1006T=0.517C=0.483
1000GenomesGlobalStudy-wide5008T=0.541C=0.459
1000GenomesSouth AsianSub978T=0.550C=0.450
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.545C=0.455
The Genome Aggregation DatabaseAfricanSub8694T=0.824C=0.176
The Genome Aggregation DatabaseAmericanSub838T=0.340C=0.660
The Genome Aggregation DatabaseEast AsianSub1612T=0.210C=0.790
The Genome Aggregation DatabaseEuropeSub18430T=0.528C=0.471
The Genome Aggregation DatabaseGlobalStudy-wide29876T=0.592C=0.407
The Genome Aggregation DatabaseOtherSub302T=0.560C=0.440
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.645C=0.354
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.544C=0.456
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs15792370.000216alcohol dependence20201924

eQTL of rs1579237 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1579237 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr165278416452784240E070-49182
chr165278659452786935E070-46487
chr165278758052787630E070-45792
chr165278923052789343E070-44079
chr165278937552789465E070-43957
chr165278963352789683E070-43739
chr165279000552790061E070-43361
chr165279084852791059E070-42363
chr165279109952791325E070-42097
chr165279136452791488E070-41934
chr165279162352791703E070-41719
chr165279179052792928E070-40494
chr165279303852793093E070-40329
chr165279328152793331E070-40091
chr165279337452793424E070-39998
chr165279348952793563E070-39859
chr165279364852793749E070-39673
chr165279402952794079E070-39343
chr165279749252797532E070-35890
chr165279957552799625E070-33797
chr165279986452799921E070-33501
chr165280059952800666E070-32756
chr165280066852800728E070-32694
chr165280080852800862E070-32560
chr165280096552801032E070-32390
chr165281460252814715E070-18707
chr165281472952814845E070-18577
chr165281518852815300E070-18122
chr165282009152820442E070-12980
chr165282080952820889E070-12533
chr165282099552821200E070-12222
chr165282122452821299E070-12123
chr165282154252822093E070-11329
chr165282220552822289E070-11133
chr165282230852822368E070-11054
chr165282239652822460E070-10962
chr165282256252822625E070-10797
chr165282276452822824E070-10598
chr165282321852823268E070-10154
chr165283478652834861E0701364
chr165283488452834946E0701462
chr165283518652835307E0701764
chr165283540652835456E0701984
chr165283550252835597E0702080
chr165283574052835824E0702318
chr165287401452874065E07040592
chr165287443752874491E07041015
chr165287476052874800E07041338
chr165278758052787630E081-45792
chr165279162352791703E081-41719
chr165279179052792928E081-40494
chr165279162352791703E082-41719
chr165279179052792928E082-40494
chr165280456552804605E082-28817
chr165280463752805081E082-28341
chr165285990952860071E08226487
chr165286021652860291E08226794
chr165286596652866162E08232544
chr165286618452866393E08232762