SNP Detail Info-rs1606851

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.21795935G>A
GRCh37.p13 chr 3	NC_000003.11:g.21837427G>A

Molecule type	Change	Amino acid[Codon]	SO Term
ZNF385D transcript	NM_024697.2:c.	N/A	Genic Upstream Transcript Variant
ZNF385D transcript variant X12	XM_011534122.1:c.	N/A	Intron Variant
ZNF385D transcript variant X13	XM_011534123.2:c.	N/A	Intron Variant
ZNF385D transcript variant X14	XM_011534124.2:c.	N/A	Intron Variant
ZNF385D transcript variant X1	XM_017007191.1:c.	N/A	Intron Variant
ZNF385D transcript variant X2	XM_017007192.1:c.	N/A	Intron Variant
ZNF385D transcript variant X3	XM_017007193.1:c.	N/A	Intron Variant
ZNF385D transcript variant X4	XM_017007194.1:c.	N/A	Intron Variant
ZNF385D transcript variant X5	XM_017007195.1:c.	N/A	Intron Variant
ZNF385D transcript variant X8	XM_017007198.1:c.	N/A	Intron Variant
ZNF385D transcript variant X9	XM_017007199.1:c.	N/A	Intron Variant
ZNF385D transcript variant X16	XM_017007203.1:c.	N/A	Intron Variant
ZNF385D transcript variant X6	XM_017007196.1:c.	N/A	Genic Upstream Transcript Variant
ZNF385D transcript variant X7	XM_017007197.1:c.	N/A	Genic Upstream Transcript Variant
ZNF385D transcript variant X10	XM_017007200.1:c.	N/A	Genic Upstream Transcript Variant
ZNF385D transcript variant X11	XM_017007201.1:c.	N/A	Genic Upstream Transcript Variant
ZNF385D transcript variant X15	XM_017007202.1:c.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.620	A=0.380
1000Genomes	American	Sub	694	G=0.700	A=0.300
1000Genomes	East Asian	Sub	1008	G=0.780	A=0.220
1000Genomes	Europe	Sub	1006	G=0.662	A=0.338
1000Genomes	Global	Study-wide	5008	G=0.684	A=0.316
1000Genomes	South Asian	Sub	978	G=0.680	A=0.320
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.636	A=0.364
The Genome Aggregation Database	African	Sub	8704	G=0.607	A=0.393
The Genome Aggregation Database	American	Sub	834	G=0.710	A=0.290
The Genome Aggregation Database	East Asian	Sub	1620	G=0.804	A=0.196
The Genome Aggregation Database	Europe	Sub	18470	G=0.630	A=0.369
The Genome Aggregation Database	Global	Study-wide	29928	G=0.635	A=0.364
The Genome Aggregation Database	Other	Sub	300	G=0.700	A=0.300
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.642	A=0.357
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.626	A=0.374

PMID	Title	Author	Journal
22072270	Genome-wide association study identifies 5q21 and 9p24.1 (KDM4C) loci associated with alcohol withdrawal symptoms.	Wang KS	J Neural Transm (Vienna)

SNP ID	p-value	Traits	Study
rs1606851	9.21E-05	alcohol withdrawal symptoms	22072270

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr3	21788892	21789248	E070	-48179
chr3	21789666	21789828	E070	-47599
chr3	21788892	21789248	E073	-48179
chr3	21788892	21789248	E081	-48179
chr3	21793205	21793776	E081	-43651
chr3	21831304	21831432	E081	-5995
chr3	21831475	21831557	E081	-5870
chr3	21831304	21831432	E082	-5995
chr3	21831475	21831557	E082	-5870
chr3	21831620	21831712	E082	-5715
chr3	21832046	21832327	E082	-5100
chr3	21832480	21832542	E082	-4885

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr3	21790115	21790228	E067	-47199
chr3	21790581	21790878	E067	-46549
chr3	21791063	21791166	E067	-46261
chr3	21791407	21793179	E067	-44248
chr3	21790581	21790878	E068	-46549
chr3	21791063	21791166	E068	-46261
chr3	21791407	21793179	E068	-44248
chr3	21790115	21790228	E069	-47199
chr3	21790581	21790878	E069	-46549
chr3	21791063	21791166	E069	-46261
chr3	21791407	21793179	E069	-44248
chr3	21790581	21790878	E070	-46549
chr3	21791063	21791166	E070	-46261
chr3	21791407	21793179	E070	-44248
chr3	21790115	21790228	E072	-47199
chr3	21790581	21790878	E072	-46549
chr3	21791063	21791166	E072	-46261
chr3	21791407	21793179	E072	-44248
chr3	21790115	21790228	E073	-47199
chr3	21790581	21790878	E073	-46549
chr3	21791063	21791166	E073	-46261
chr3	21791407	21793179	E073	-44248
chr3	21791407	21793179	E074	-44248
chr3	21790115	21790228	E081	-47199
chr3	21790581	21790878	E081	-46549
chr3	21791063	21791166	E081	-46261
chr3	21791407	21793179	E081	-44248
chr3	21790115	21790228	E082	-47199
chr3	21790581	21790878	E082	-46549
chr3	21791063	21791166	E082	-46261
chr3	21791407	21793179	E082	-44248

rs1606851