| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 9 | NC_000009.12:g.115461151G>A |
| GRCh37.p13 chr 9 | NC_000009.11:g.118223430G>A |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.834 | A=0.166 |
| 1000Genomes | American | Sub | 694 | G=0.580 | A=0.420 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.788 | A=0.212 |
| 1000Genomes | Europe | Sub | 1006 | G=0.661 | A=0.339 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.732 | A=0.268 |
| 1000Genomes | South Asian | Sub | 978 | G=0.720 | A=0.280 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.614 | A=0.386 |
| The Genome Aggregation Database | African | Sub | 8698 | G=0.818 | A=0.182 |
| The Genome Aggregation Database | American | Sub | 838 | G=0.560 | A=0.440 |
| The Genome Aggregation Database | East Asian | Sub | 1604 | G=0.745 | A=0.255 |
| The Genome Aggregation Database | Europe | Sub | 18454 | G=0.643 | A=0.356 |
| The Genome Aggregation Database | Global | Study-wide | 29896 | G=0.696 | A=0.303 |
| The Genome Aggregation Database | Other | Sub | 302 | G=0.590 | A=0.410 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.705 | A=0.294 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.630 | A=0.370 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs1632812 | 0.00079 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr9 | 118199038 | 118199087 | E070 | -24343 |
| chr9 | 118199226 | 118199290 | E070 | -24140 |
| chr9 | 118199330 | 118199386 | E070 | -24044 |
| chr9 | 118199467 | 118199994 | E070 | -23436 |
| chr9 | 118200295 | 118200374 | E070 | -23056 |
| chr9 | 118200420 | 118200470 | E070 | -22960 |
| chr9 | 118200549 | 118200830 | E070 | -22600 |
| chr9 | 118206387 | 118208414 | E070 | -15016 |