rs1651939

Homo sapiens
C>A
None
Check p-value
SNV (Single Nucleotide Variation)
C==0022 (664/29974,GnomAD)
C==0037 (1092/29118,TOPMED)
C==0030 (152/5008,1000G)
C==0000 (0/3854,ALSPAC)
C==0001 (2/3708,TWINSUK)
chr7:128374082 (GRCh38.p7) (7q32.1)
AD
GWASdb2
1   publication(s)
See rs on genome
89 Enhancers around
18 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.128374082C>A
GRCh37.p13 chr 7NC_000007.13:g.128014136C>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.112A=0.888
1000GenomesAmericanSub694C=0.010A=0.990
1000GenomesEast AsianSub1008C=0.000A=1.000
1000GenomesEuropeSub1006C=0.000A=1.000
1000GenomesGlobalStudy-wide5008C=0.030A=0.970
1000GenomesSouth AsianSub978C=0.000A=1.000
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.000A=1.000
The Genome Aggregation DatabaseAfricanSub8718C=0.075A=0.925
The Genome Aggregation DatabaseAmericanSub838C=0.010A=0.990
The Genome Aggregation DatabaseEast AsianSub1618C=0.000A=1.000
The Genome Aggregation DatabaseEuropeSub18498C=0.000A=0.999
The Genome Aggregation DatabaseGlobalStudy-wide29974C=0.022A=0.977
The Genome Aggregation DatabaseOtherSub302C=0.000A=1.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.037A=0.962
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.001A=0.999
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs16519390.000662alcohol dependence21314694

eQTL of rs1651939 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1651939 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr7127981415127981455E067-32681
chr7127981758127981798E067-32338
chr7127982127127982177E067-31959
chr7127982328127982388E067-31748
chr7128026980128027030E06712844
chr7128027086128027138E06712950
chr7128027177128027355E06713041
chr7127987694127988054E068-26082
chr7127988062127988145E068-25991
chr7128055415128055595E06841279
chr7127981415127981455E069-32681
chr7127982127127982177E069-31959
chr7127982328127982388E069-31748
chr7128027385128028285E06913249
chr7127982328127982388E070-31748
chr7127988062127988145E070-25991
chr7127988421127988665E070-25471
chr7127988781127989003E070-25133
chr7127990205127990367E070-23769
chr7128026594128026699E07012458
chr7128026738128026861E07012602
chr7128026980128027030E07012844
chr7128027086128027138E07012950
chr7128027177128027355E07013041
chr7128043030128043108E07028894
chr7128043310128043381E07029174
chr7128043667128043713E07029531
chr7128043762128043827E07029626
chr7128043969128044023E07029833
chr7127982328127982388E071-31748
chr7128027177128027355E07113041
chr7128027385128028285E07113249
chr7128055415128055595E07141279
chr7128062815128062918E07148679
chr7127981415127981455E072-32681
chr7127981758127981798E072-32338
chr7127982127127982177E072-31959
chr7127982328127982388E072-31748
chr7127987694127988054E072-26082
chr7127988062127988145E072-25991
chr7128027177128027355E07213041
chr7128027385128028285E07213249
chr7128043667128043713E07229531
chr7128043762128043827E07229626
chr7128043969128044023E07229833
chr7128055415128055595E07241279
chr7127981758127981798E073-32338
chr7127982328127982388E073-31748
chr7128027385128028285E07313249
chr7128044098128047585E07329962
chr7127982328127982388E074-31748
chr7128027385128028285E07413249
chr7127982127127982177E081-31959
chr7128027177128027355E08113041
chr7128027385128028285E08113249
chr7128042856128042906E08128720
chr7128043667128043713E08129531
chr7128043762128043827E08129626
chr7128043969128044023E08129833
chr7128044098128047585E08129962
chr7128051038128051096E08136902
chr7128051318128051389E08137182
chr7128059015128059055E08144879
chr7128059247128059338E08145111
chr7128059357128059432E08145221
chr7128061853128061893E08147717
chr7128061961128062011E08147825
chr7128062084128062134E08147948
chr7128062208128062252E08148072
chr7128062700128062788E08148564
chr7128062815128062918E08148679
chr7128062938128063362E08148802
chr7128063607128063767E08149471
chr7128063776128064103E08149640
chr7127982127127982177E082-31959
chr7127982328127982388E082-31748
chr7127993317127993367E082-20769
chr7127993393127993497E082-20639
chr7128058688128058755E08244552
chr7128059015128059055E08244879
chr7128059247128059338E08245111
chr7128059357128059432E08245221
chr7128059470128059569E08245334
chr7128059709128059769E08245573
chr7128062700128062788E08248564
chr7128062815128062918E08248679
chr7128062938128063362E08248802
chr7128063607128063767E08249471
chr7128063776128064103E08249640










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr7127982735127984648E067-29488
chr7128000311128002578E067-11558
chr7127982735127984648E068-29488
chr7128000311128002578E068-11558
chr7127982735127984648E069-29488
chr7128000311128002578E069-11558
chr7127982735127984648E070-29488
chr7127982735127984648E071-29488
chr7128000311128002578E071-11558
chr7127982735127984648E072-29488
chr7128000311128002578E072-11558
chr7127982735127984648E073-29488
chr7128000311128002578E073-11558
chr7127982735127984648E074-29488
chr7128000311128002578E074-11558
chr7127982735127984648E081-29488
chr7127982735127984648E082-29488
chr7128000311128002578E082-11558