rs1652920

Homo sapiens
T>A
None
Check p-value
SNV (Single Nucleotide Variation)
T==0234 (7006/29822,GnomAD)
T==0214 (6235/29118,TOPMED)
T==0226 (1133/5008,1000G)
T==0284 (1094/3854,ALSPAC)
T==0283 (1050/3708,TWINSUK)
chr14:41297081 (GRCh38.p7) (14q21.1)
ND
GWASdb2
1   publication(s)
See rs on genome
3 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 14NC_000014.9:g.41297081T>A
GRCh37.p13 chr 14NC_000014.8:g.41766284T>A
LOC100533628 pseudogeneNG_028872.1:g.772T>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.112A=0.888
1000GenomesAmericanSub694T=0.210A=0.790
1000GenomesEast AsianSub1008T=0.250A=0.750
1000GenomesEuropeSub1006T=0.264A=0.736
1000GenomesGlobalStudy-wide5008T=0.226A=0.774
1000GenomesSouth AsianSub978T=0.330A=0.670
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.284A=0.716
The Genome Aggregation DatabaseAfricanSub8718T=0.169A=0.831
The Genome Aggregation DatabaseAmericanSub830T=0.170A=0.830
The Genome Aggregation DatabaseEast AsianSub1566T=0.262A=0.738
The Genome Aggregation DatabaseEuropeSub18408T=0.266A=0.733
The Genome Aggregation DatabaseGlobalStudy-wide29822T=0.234A=0.765
The Genome Aggregation DatabaseOtherSub300T=0.250A=0.750
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.214A=0.785
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.283A=0.717
PMID Title Author Journal
17158188Novel genes identified in a high-density genome wide association study for nicotine dependence.Bierut LJHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs16529200.000205nicotine dependence17158188

eQTL of rs1652920 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1652920 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr144175450541754720E070-11564
chr144174720041747372E081-18912
chr144174720041747372E082-18912