rs1655124

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
G==0163 (4899/29952,GnomAD)
G==0150 (4383/29118,TOPMED)
G==0100 (502/5008,1000G)
G==0217 (837/3854,ALSPAC)
G==0229 (850/3708,TWINSUK)
chr10:130893462 (GRCh38.p7) (10q26.3)
ND
GWASdb2
1   publication(s)
See rs on genome
57 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.130893462G>A
GRCh37.p13 chr 10NC_000010.10:g.132691725G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.083A=0.917
1000GenomesAmericanSub694G=0.140A=0.860
1000GenomesEast AsianSub1008G=0.018A=0.982
1000GenomesEuropeSub1006G=0.243A=0.757
1000GenomesGlobalStudy-wide5008G=0.100A=0.900
1000GenomesSouth AsianSub978G=0.040A=0.960
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.217A=0.783
The Genome Aggregation DatabaseAfricanSub8728G=0.088A=0.912
The Genome Aggregation DatabaseAmericanSub836G=0.120A=0.880
The Genome Aggregation DatabaseEast AsianSub1616G=0.002A=0.998
The Genome Aggregation DatabaseEuropeSub18470G=0.213A=0.787
The Genome Aggregation DatabaseGlobalStudy-wide29952G=0.163A=0.836
The Genome Aggregation DatabaseOtherSub302G=0.300A=0.700
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.150A=0.849
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.229A=0.771
PMID Title Author Journal
17158188Novel genes identified in a high-density genome wide association study for nicotine dependence.Bierut LJHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs16551240.00053nicotine dependence17158188

eQTL of rs1655124 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1655124 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr10132676249132676299E068-15426
chr10132712775132712894E07021050
chr10132713409132713459E07021684
chr10132713502132713552E07021777
chr10132717827132718134E07026102
chr10132725503132725888E07033778
chr10132726109132726231E07034384
chr10132726352132726402E07034627
chr10132731355132731468E07039630
chr10132733231132733671E07041506
chr10132733770132733839E07042045
chr10132659023132659246E081-32479
chr10132682518132682592E081-9133
chr10132683609132683943E081-7782
chr10132719847132719963E08128122
chr10132720149132720862E08128424
chr10132721630132721685E08129905
chr10132721750132721804E08130025
chr10132721833132722852E08130108
chr10132722862132723009E08131137
chr10132723798132723870E08132073
chr10132725503132725888E08133778
chr10132726109132726231E08134384
chr10132726352132726402E08134627
chr10132729604132729918E08137879
chr10132730224132730290E08138499
chr10132730363132730483E08138638
chr10132730579132731225E08138854
chr10132731355132731468E08139630
chr10132731644132731707E08139919
chr10132731928132731978E08140203
chr10132732295132732452E08140570
chr10132732476132733214E08140751
chr10132733231132733671E08141506
chr10132733770132733839E08142045
chr10132733956132734422E08142231
chr10132734515132734662E08142790
chr10132734663132734730E08142938
chr10132734777132734993E08143052
chr10132735061132735116E08143336
chr10132735143132735440E08143418
chr10132713409132713459E08221684
chr10132713502132713552E08221777
chr10132721750132721804E08230025
chr10132721833132722852E08230108
chr10132722862132723009E08231137
chr10132725503132725888E08233778
chr10132726109132726231E08234384
chr10132726352132726402E08234627
chr10132729604132729918E08237879
chr10132730224132730290E08238499
chr10132730363132730483E08238638
chr10132730579132731225E08238854
chr10132731644132731707E08239919
chr10132732476132733214E08240751
chr10132733231132733671E08241506
chr10132733770132733839E08242045