rs1655129

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
A==0171 (5139/29942,GnomAD)
A==0162 (4734/29118,TOPMED)
A==0110 (552/5008,1000G)
A==0218 (839/3854,ALSPAC)
A==0230 (851/3708,TWINSUK)
chr10:130895898 (GRCh38.p7) (10q26.3)
ND
GWASdb2
1   publication(s)
See rs on genome
57 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.130895898A>G
GRCh37.p13 chr 10NC_000010.10:g.132694161A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.120G=0.880
1000GenomesAmericanSub694A=0.140G=0.860
1000GenomesEast AsianSub1008A=0.018G=0.982
1000GenomesEuropeSub1006A=0.243G=0.757
1000GenomesGlobalStudy-wide5008A=0.110G=0.890
1000GenomesSouth AsianSub978A=0.040G=0.960
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.218G=0.782
The Genome Aggregation DatabaseAfricanSub8712A=0.116G=0.884
The Genome Aggregation DatabaseAmericanSub838A=0.120G=0.880
The Genome Aggregation DatabaseEast AsianSub1622A=0.002G=0.998
The Genome Aggregation DatabaseEuropeSub18470A=0.212G=0.787
The Genome Aggregation DatabaseGlobalStudy-wide29942A=0.171G=0.828
The Genome Aggregation DatabaseOtherSub300A=0.300G=0.700
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.162G=0.837
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.230G=0.770
PMID Title Author Journal
17158188Novel genes identified in a high-density genome wide association study for nicotine dependence.Bierut LJHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs16551290.000948nicotine dependence17158188

eQTL of rs1655129 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1655129 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr10132676249132676299E068-17862
chr10132712775132712894E07018614
chr10132713409132713459E07019248
chr10132713502132713552E07019341
chr10132717827132718134E07023666
chr10132725503132725888E07031342
chr10132726109132726231E07031948
chr10132726352132726402E07032191
chr10132731355132731468E07037194
chr10132733231132733671E07039070
chr10132733770132733839E07039609
chr10132659023132659246E081-34915
chr10132682518132682592E081-11569
chr10132683609132683943E081-10218
chr10132719847132719963E08125686
chr10132720149132720862E08125988
chr10132721630132721685E08127469
chr10132721750132721804E08127589
chr10132721833132722852E08127672
chr10132722862132723009E08128701
chr10132723798132723870E08129637
chr10132725503132725888E08131342
chr10132726109132726231E08131948
chr10132726352132726402E08132191
chr10132729604132729918E08135443
chr10132730224132730290E08136063
chr10132730363132730483E08136202
chr10132730579132731225E08136418
chr10132731355132731468E08137194
chr10132731644132731707E08137483
chr10132731928132731978E08137767
chr10132732295132732452E08138134
chr10132732476132733214E08138315
chr10132733231132733671E08139070
chr10132733770132733839E08139609
chr10132733956132734422E08139795
chr10132734515132734662E08140354
chr10132734663132734730E08140502
chr10132734777132734993E08140616
chr10132735061132735116E08140900
chr10132735143132735440E08140982
chr10132713409132713459E08219248
chr10132713502132713552E08219341
chr10132721750132721804E08227589
chr10132721833132722852E08227672
chr10132722862132723009E08228701
chr10132725503132725888E08231342
chr10132726109132726231E08231948
chr10132726352132726402E08232191
chr10132729604132729918E08235443
chr10132730224132730290E08236063
chr10132730363132730483E08236202
chr10132730579132731225E08236418
chr10132731644132731707E08237483
chr10132732476132733214E08238315
chr10132733231132733671E08239070
chr10132733770132733839E08239609