rs16833203

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0255 (7583/29646,GnomAD)
T=0230 (6721/29118,TOPMED)
T=0351 (1756/5008,1000G)
T=0244 (942/3854,ALSPAC)
T=0241 (893/3708,TWINSUK)
chr1:30061036 (GRCh38.p7) (1p35.2)
ND
GWASdb2
1   publication(s)
See rs on genome
33 Enhancers around
1 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.30061036C>T
GRCh37.p13 chr 1NC_000001.10:g.30533883C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.801T=0.199
1000GenomesAmericanSub694C=0.640T=0.360
1000GenomesEast AsianSub1008C=0.377T=0.623
1000GenomesEuropeSub1006C=0.764T=0.236
1000GenomesGlobalStudy-wide5008C=0.649T=0.351
1000GenomesSouth AsianSub978C=0.620T=0.380
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.756T=0.244
The Genome Aggregation DatabaseAfricanSub8678C=0.795T=0.205
The Genome Aggregation DatabaseAmericanSub834C=0.590T=0.410
The Genome Aggregation DatabaseEast AsianSub1612C=0.395T=0.605
The Genome Aggregation DatabaseEuropeSub18220C=0.756T=0.243
The Genome Aggregation DatabaseGlobalStudy-wide29646C=0.744T=0.255
The Genome Aggregation DatabaseOtherSub302C=0.850T=0.150
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.769T=0.230
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.759T=0.241
PMID Title Author Journal
17158188Novel genes identified in a high-density genome wide association study for nicotine dependence.Bierut LJHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs168332030.000553nicotine dependence17158188

eQTL of rs16833203 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs16833203 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr13053431630535122E067433
chr13055649930556558E06722616
chr13055656630556626E06722683
chr13055664630557342E06722763
chr13050799830508072E070-25811
chr13055777030557868E07023887
chr13055823530558429E07024352
chr13055858630559174E07024703
chr13053431630535122E071433
chr13055649930556558E07222616
chr13055656630556626E07222683
chr13055858630559174E07224703
chr13055649930556558E07322616
chr13055656630556626E07322683
chr13055664630557342E07322763
chr13058272030583083E07348837
chr13050799830508072E081-25811
chr13055656630556626E08122683
chr13055664630557342E08122763
chr13055777030557868E08123887
chr13055823530558429E08124352
chr13055858630559174E08124703
chr13056380530563882E08129922
chr13057242030572470E08138537
chr13057294330573091E08139060
chr13057800330578328E08144120
chr13058272030583083E08148837
chr13055664630557342E08222763
chr13055777030557868E08223887
chr13055823530558429E08224352
chr13057664930576891E08242766
chr13057693430577131E08243051
chr13058272030583083E08248837







Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr13055924530559301E08225362