SNP Detail Info-rs16833847

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0042 (1280/29912,GnomAD)
G=0045 (1324/29118,TOPMED)
G=0071 (356/5008,1000G)
G=0062 (238/3854,ALSPAC)
G=0066 (243/3708,TWINSUK)

Position: chr1:191850751 (GRCh38.p7) (1q31.2)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.191850751A>G
GRCh37.p13 chr 1	NC_000001.10:g.191819881A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.987	G=0.013
1000Genomes	American	Sub	694	A=0.870	G=0.130
1000Genomes	East Asian	Sub	1008	A=0.934	G=0.066
1000Genomes	Europe	Sub	1006	A=0.926	G=0.074
1000Genomes	Global	Study-wide	5008	A=0.929	G=0.071
1000Genomes	South Asian	Sub	978	A=0.890	G=0.110
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.938	G=0.062
The Genome Aggregation Database	African	Sub	8720	A=0.978	G=0.022
The Genome Aggregation Database	American	Sub	834	A=0.840	G=0.160
The Genome Aggregation Database	East Asian	Sub	1612	A=0.940	G=0.060
The Genome Aggregation Database	Europe	Sub	18446	A=0.954	G=0.045
The Genome Aggregation Database	Global	Study-wide	29912	A=0.957	G=0.042
The Genome Aggregation Database	Other	Sub	300	A=0.950	G=0.050
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.954	G=0.045
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.934	G=0.066

PMID	Title	Author	Journal
17158188	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Bierut LJ	Hum Mol Genet

SNP ID	p-value	Traits	Study
rs16833847	0.00043	nicotine dependence	17158188

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs16833847