| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 1 | NC_000001.11:g.198447545A>G |
| GRCh37.p13 chr 1 | NC_000001.10:g.198416675A>G |
| GRCh38.p7 chr 1 alt locus HSCHR1_3_CTG31 | NW_003315907.2:g.77463A>G |
| GRCh37.p13 chr 1 novel patch HSCHR1_3_CTG31 | NW_003315907.1:g.77463A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.759 | G=0.241 |
| 1000Genomes | American | Sub | 694 | A=0.860 | G=0.140 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.825 | G=0.175 |
| 1000Genomes | Europe | Sub | 1006 | A=0.963 | G=0.037 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.854 | G=0.146 |
| 1000Genomes | South Asian | Sub | 978 | A=0.890 | G=0.110 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.966 | G=0.034 |
| The Genome Aggregation Database | African | Sub | 8702 | A=0.811 | G=0.189 |
| The Genome Aggregation Database | American | Sub | 830 | A=0.800 | G=0.200 |
| The Genome Aggregation Database | East Asian | Sub | 1608 | A=0.823 | G=0.177 |
| The Genome Aggregation Database | Europe | Sub | 18432 | A=0.959 | G=0.040 |
| The Genome Aggregation Database | Global | Study-wide | 29874 | A=0.904 | G=0.095 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.970 | G=0.030 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.879 | G=0.120 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.970 | G=0.030 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 17158188 | Novel genes identified in a high-density genome wide association study for nicotine dependence. | Bierut LJ | Hum Mol Genet |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs16843093 | 0.000164 | nicotine dependence | 17158188 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value |
|---|---|---|---|---|
| cg17942929 | chr17:43168803 | NMT1 | -0.039508822947119 | 1.0219e-9 |
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr1 | 198460280 | 198461019 | E067 | 43605 |
| chr1 | 198450793 | 198451297 | E071 | 34118 |
| chr1 | 198466247 | 198466315 | E081 | 49572 |
| chr1 | 198466387 | 198466659 | E081 | 49712 |