| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 5 | NC_000005.10:g.25258761A>G |
| GRCh37.p13 chr 5 | NC_000005.9:g.25258870A>G |
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| LINC02211 transcript | NR_136209.1:n. | N/A | Intron Variant |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.860 | G=0.140 |
| 1000Genomes | American | Sub | 694 | A=0.980 | G=0.020 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.999 | G=0.001 |
| 1000Genomes | Europe | Sub | 1006 | A=0.997 | G=0.003 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.952 | G=0.048 |
| 1000Genomes | South Asian | Sub | 978 | A=0.960 | G=0.040 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.998 | G=0.002 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.947 | G=0.052 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.998 | G=0.002 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 17158188 | Novel genes identified in a high-density genome wide association study for nicotine dependence. | Bierut LJ | Hum Mol Genet |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs16894266 | 0.000903 | nicotine dependence | 17158188 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.