rs16900003

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0333 (9710/29118,TOPMED)
A=0287 (1436/5008,1000G)
A=0307 (1184/3854,ALSPAC)
A=0311 (1154/3708,TWINSUK)
chr8:124751642 (GRCh38.p7) (8q24.13)
AD
GWASdb2
1   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 8NC_000008.11:g.124751642G>A
GRCh37.p13 chr 8NC_000008.10:g.125763884G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.635A=0.365
1000GenomesAmericanSub694G=0.790A=0.210
1000GenomesEast AsianSub1008G=0.846A=0.154
1000GenomesEuropeSub1006G=0.669A=0.331
1000GenomesGlobalStudy-wide5008G=0.713A=0.287
1000GenomesSouth AsianSub978G=0.670A=0.330
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.693A=0.307
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.666A=0.333
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.689A=0.311
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs169000030.00083alcohol dependence21314694

eQTL of rs16900003 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs16900003 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr8125713958125714099E067-49785
chr8125714129125714193E067-49691
chr8125714329125714445E067-49439
chr8125714626125714676E067-49208
chr8125714700125714786E067-49098
chr8125718115125718195E067-45689
chr8125718373125718494E067-45390
chr8125718638125718893E067-44991
chr8125719005125719081E067-44803
chr8125720438125720983E067-42901
chr8125721019125721076E067-42808
chr8125721238125722674E067-41210
chr8125722795125723164E067-40720
chr8125723179125723570E067-40314
chr8125723579125723813E067-40071
chr8125728249125728300E067-35584
chr8125728428125728478E067-35406
chr8125728541125728669E067-35215
chr8125728709125728897E067-34987
chr8125730238125730295E067-33589
chr8125730426125730500E067-33384
chr8125730574125731065E067-32819
chr8125731193125731254E067-32630
chr8125731508125731584E067-32300
chr8125731660125731720E067-32164
chr8125731778125732005E067-31879
chr8125732043125732093E067-31791
chr8125732293125732346E067-31538
chr8125732380125732464E067-31420
chr8125732472125733265E067-30619
chr8125733295125733519E067-30365
chr8125733979125734228E067-29656
chr8125734333125734420E067-29464
chr8125734423125734489E067-29395
chr8125734496125734612E067-29272
chr8125734772125734885E067-28999
chr8125735140125735194E067-28690
chr8125735262125735374E067-28510
chr8125735510125735560E067-28324
chr8125736574125736729E067-27155
chr8125737599125737698E067-26186
chr8125737750125737833E067-26051
chr8125737864125737914E067-25970
chr8125762106125762269E067-1615
chr8125762599125762712E067-1172
chr8125783790125783873E06719906
chr8125784024125785000E06720140
chr8125787844125788788E06723960
chr8125808757125808801E06744873
chr8125808855125808908E06744971
chr8125808918125809000E06745034
chr8125809094125809134E06745210
chr8125809384125809434E06745500
chr8125810346125810757E06746462
chr8125811028125811372E06747144
chr8125811397125811488E06747513
chr8125811650125812037E06747766
chr8125713958125714099E068-49785
chr8125714129125714193E068-49691
chr8125714329125714445E068-49439
chr8125714626125714676E068-49208
chr8125714700125714786E068-49098
chr8125718115125718195E068-45689
chr8125718373125718494E068-45390
chr8125718638125718893E068-44991
chr8125719005125719081E068-44803
chr8125720438125720983E068-42901
chr8125721019125721076E068-42808
chr8125721238125722674E068-41210
chr8125722795125723164E068-40720
chr8125723179125723570E068-40314
chr8125728249125728300E068-35584
chr8125728428125728478E068-35406
chr8125728541125728669E068-35215
chr8125728709125728897E068-34987
chr8125730238125730295E068-33589
chr8125730426125730500E068-33384
chr8125730574125731065E068-32819
chr8125731193125731254E068-32630
chr8125731508125731584E068-32300
chr8125731660125731720E068-32164
chr8125731778125732005E068-31879
chr8125732043125732093E068-31791
chr8125732293125732346E068-31538
chr8125732380125732464E068-31420
chr8125732472125733265E068-30619
chr8125733979125734228E068-29656
chr8125734333125734420E068-29464
chr8125734423125734489E068-29395
chr8125734496125734612E068-29272
chr8125734772125734885E068-28999
chr8125735140125735194E068-28690
chr8125735262125735374E068-28510
chr8125735510125735560E068-28324
chr8125735792125735842E068-28042
chr8125735895125735995E068-27889
chr8125736574125736729E068-27155
chr8125736927125737049E068-26835
chr8125737119125737547E068-26337
chr8125737599125737698E068-26186
chr8125737750125737833E068-26051
chr8125737864125737914E068-25970
chr8125778652125778702E06814768
chr8125784024125785000E06820140
chr8125787844125788788E06823960
chr8125788843125788920E06824959
chr8125796831125796904E06832947
chr8125796961125797054E06833077
chr8125797160125797291E06833276
chr8125809384125809434E06845500
chr8125810346125810757E06846462
chr8125811028125811372E06847144
chr8125811397125811488E06847513
chr8125811650125812037E06847766
chr8125713958125714099E069-49785
chr8125714129125714193E069-49691
chr8125714329125714445E069-49439
chr8125718638125718893E069-44991
chr8125719005125719081E069-44803
chr8125719185125719412E069-44472
chr8125720438125720983E069-42901
chr8125721019125721076E069-42808
chr8125721238125722674E069-41210
chr8125722795125723164E069-40720
chr8125723179125723570E069-40314
chr8125723579125723813E069-40071
chr8125727174125727508E069-36376
chr8125727659125727742E069-36142
chr8125727767125727821E069-36063
chr8125727853125727906E069-35978
chr8125727937125727997E069-35887
chr8125728076125728126E069-35758
chr8125728249125728300E069-35584
chr8125728428125728478E069-35406
chr8125728541125728669E069-35215
chr8125728709125728897E069-34987
chr8125730238125730295E069-33589
chr8125730426125730500E069-33384
chr8125730574125731065E069-32819
chr8125731193125731254E069-32630
chr8125731508125731584E069-32300
chr8125731660125731720E069-32164
chr8125732293125732346E069-31538
chr8125732380125732464E069-31420
chr8125732472125733265E069-30619
chr8125735792125735842E069-28042
chr8125735895125735995E069-27889
chr8125736574125736729E069-27155
chr8125736927125737049E069-26835
chr8125741868125742266E069-21618
chr8125742327125742406E069-21478
chr8125742411125742614E069-21270
chr8125784024125785000E06920140
chr8125787844125788788E06923960
chr8125796831125796904E06932947
chr8125796961125797054E06933077
chr8125797160125797291E06933276
chr8125809384125809434E06945500
chr8125810346125810757E06946462
chr8125811028125811372E06947144
chr8125811397125811488E06947513
chr8125811650125812037E06947766
chr8125812067125812107E06948183
chr8125812181125812235E06948297
chr8125713958125714099E070-49785
chr8125714129125714193E070-49691
chr8125714329125714445E070-49439
chr8125714626125714676E070-49208
chr8125714700125714786E070-49098
chr8125718115125718195E070-45689
chr8125718373125718494E070-45390
chr8125718638125718893E070-44991
chr8125719005125719081E070-44803
chr8125719185125719412E070-44472
chr8125720194125720278E070-43606
chr8125720438125720983E070-42901
chr8125721019125721076E070-42808
chr8125721238125722674E070-41210
chr8125726251125726534E070-37350
chr8125726971125727021E070-36863
chr8125727174125727508E070-36376
chr8125727659125727742E070-36142
chr8125727767125727821E070-36063
chr8125727853125727906E070-35978
chr8125727937125727997E070-35887
chr8125728076125728126E070-35758
chr8125728249125728300E070-35584
chr8125728428125728478E070-35406
chr8125728541125728669E070-35215
chr8125728709125728897E070-34987
chr8125731508125731584E070-32300
chr8125731660125731720E070-32164
chr8125731778125732005E070-31879
chr8125732043125732093E070-31791
chr8125732293125732346E070-31538
chr8125732380125732464E070-31420
chr8125732472125733265E070-30619
chr8125733295125733519E070-30365
chr8125733979125734228E070-29656
chr8125734333125734420E070-29464
chr8125734423125734489E070-29395
chr8125741759125741821E070-22063
chr8125741868125742266E070-21618
chr8125742327125742406E070-21478
chr8125742411125742614E070-21270
chr8125742620125742670E070-21214
chr8125742678125742735E070-21149
chr8125743019125743073E070-20811
chr8125743100125743150E070-20734
chr8125744009125744197E070-19687
chr8125808757125808801E07044873
chr8125808855125808908E07044971
chr8125808918125809000E07045034
chr8125809094125809134E07045210
chr8125809384125809434E07045500
chr8125810346125810757E07046462
chr8125811028125811372E07047144
chr8125811397125811488E07047513
chr8125811650125812037E07047766
chr8125812067125812107E07048183
chr8125812181125812235E07048297
chr8125812265125812315E07048381
chr8125812392125812442E07048508
chr8125713958125714099E071-49785
chr8125714129125714193E071-49691
chr8125714329125714445E071-49439
chr8125718373125718494E071-45390
chr8125718638125718893E071-44991
chr8125719005125719081E071-44803
chr8125720438125720983E071-42901
chr8125721019125721076E071-42808
chr8125721238125722674E071-41210
chr8125722795125723164E071-40720
chr8125723179125723570E071-40314
chr8125723579125723813E071-40071
chr8125730238125730295E071-33589
chr8125730426125730500E071-33384
chr8125730574125731065E071-32819
chr8125731193125731254E071-32630
chr8125731508125731584E071-32300
chr8125731660125731720E071-32164
chr8125731778125732005E071-31879
chr8125732043125732093E071-31791
chr8125732293125732346E071-31538
chr8125732380125732464E071-31420
chr8125732472125733265E071-30619
chr8125734772125734885E071-28999
chr8125735140125735194E071-28690
chr8125735262125735374E071-28510
chr8125735510125735560E071-28324
chr8125735792125735842E071-28042
chr8125735895125735995E071-27889
chr8125736574125736729E071-27155
chr8125736927125737049E071-26835
chr8125737119125737547E071-26337
chr8125737599125737698E071-26186
chr8125737750125737833E071-26051
chr8125737864125737914E071-25970
chr8125762599125762712E071-1172
chr8125762733125762843E071-1041
chr8125762855125762905E071-979
chr8125762959125763158E071-726
chr8125763255125763423E071-461
chr8125784024125785000E07120140
chr8125787844125788788E07123960
chr8125796831125796904E07132947
chr8125796961125797054E07133077
chr8125797160125797291E07133276
chr8125801912125802848E07138028
chr8125809384125809434E07145500
chr8125810346125810757E07146462
chr8125811028125811372E07147144
chr8125811397125811488E07147513
chr8125811650125812037E07147766
chr8125812067125812107E07148183
chr8125812181125812235E07148297
chr8125718115125718195E072-45689
chr8125718373125718494E072-45390
chr8125718638125718893E072-44991
chr8125720438125720983E072-42901
chr8125721019125721076E072-42808
chr8125721238125722674E072-41210
chr8125722795125723164E072-40720
chr8125723179125723570E072-40314
chr8125723579125723813E072-40071
chr8125728076125728126E072-35758
chr8125728249125728300E072-35584
chr8125728428125728478E072-35406
chr8125728541125728669E072-35215
chr8125728709125728897E072-34987
chr8125730574125731065E072-32819
chr8125731193125731254E072-32630
chr8125732293125732346E072-31538
chr8125732380125732464E072-31420
chr8125736574125736729E072-27155
chr8125736927125737049E072-26835
chr8125737750125737833E072-26051
chr8125737864125737914E072-25970
chr8125784024125785000E07220140
chr8125787844125788788E07223960
chr8125788843125788920E07224959
chr8125808757125808801E07244873
chr8125808855125808908E07244971
chr8125808918125809000E07245034
chr8125809094125809134E07245210
chr8125809384125809434E07245500
chr8125810346125810757E07246462
chr8125811028125811372E07247144
chr8125811397125811488E07247513
chr8125811650125812037E07247766
chr8125812067125812107E07248183
chr8125812181125812235E07248297
chr8125721238125722674E073-41210
chr8125722795125723164E073-40720
chr8125723179125723570E073-40314
chr8125723579125723813E073-40071
chr8125728076125728126E073-35758
chr8125728249125728300E073-35584
chr8125728428125728478E073-35406
chr8125728541125728669E073-35215
chr8125728709125728897E073-34987
chr8125730238125730295E073-33589
chr8125730426125730500E073-33384
chr8125730574125731065E073-32819
chr8125731193125731254E073-32630
chr8125731508125731584E073-32300
chr8125732043125732093E073-31791
chr8125732293125732346E073-31538
chr8125732380125732464E073-31420
chr8125732472125733265E073-30619
chr8125733295125733519E073-30365
chr8125733979125734228E073-29656
chr8125762599125762712E073-1172
chr8125762733125762843E073-1041
chr8125762855125762905E073-979
chr8125762959125763158E073-726
chr8125784024125785000E07320140
chr8125787844125788788E07323960
chr8125788843125788920E07324959
chr8125808336125808727E07344452
chr8125808757125808801E07344873
chr8125808855125808908E07344971
chr8125808918125809000E07345034
chr8125809094125809134E07345210
chr8125811028125811372E07347144
chr8125811397125811488E07347513
chr8125811650125812037E07347766
chr8125713958125714099E074-49785
chr8125714129125714193E074-49691
chr8125714329125714445E074-49439
chr8125714626125714676E074-49208
chr8125714700125714786E074-49098
chr8125718638125718893E074-44991
chr8125719005125719081E074-44803
chr8125720438125720983E074-42901
chr8125721019125721076E074-42808
chr8125721238125722674E074-41210
chr8125722795125723164E074-40720
chr8125723179125723570E074-40314
chr8125723579125723813E074-40071
chr8125724309125724384E074-39500
chr8125724549125724948E074-38936
chr8125726251125726534E074-37350
chr8125727767125727821E074-36063
chr8125727853125727906E074-35978
chr8125727937125727997E074-35887
chr8125728076125728126E074-35758
chr8125728249125728300E074-35584
chr8125728428125728478E074-35406
chr8125728541125728669E074-35215
chr8125728709125728897E074-34987
chr8125730426125730500E074-33384
chr8125730574125731065E074-32819
chr8125731193125731254E074-32630
chr8125732472125733265E074-30619
chr8125733295125733519E074-30365
chr8125735262125735374E074-28510
chr8125735895125735995E074-27889
chr8125736574125736729E074-27155
chr8125736927125737049E074-26835
chr8125737750125737833E074-26051
chr8125737864125737914E074-25970
chr8125762599125762712E074-1172
chr8125762733125762843E074-1041
chr8125762855125762905E074-979
chr8125762959125763158E074-726
chr8125784024125785000E07420140
chr8125787844125788788E07423960
chr8125801696125801896E07437812
chr8125801912125802848E07438028
chr8125808336125808727E07444452
chr8125808757125808801E07444873
chr8125808855125808908E07444971
chr8125808918125809000E07445034
chr8125809094125809134E07445210
chr8125809384125809434E07445500
chr8125810346125810757E07446462
chr8125811028125811372E07447144
chr8125811397125811488E07447513
chr8125811650125812037E07447766
chr8125812067125812107E07448183
chr8125812181125812235E07448297
chr8125718115125718195E081-45689
chr8125718373125718494E081-45390
chr8125718638125718893E081-44991
chr8125719005125719081E081-44803
chr8125719185125719412E081-44472
chr8125721238125722674E081-41210
chr8125722795125723164E081-40720
chr8125723179125723570E081-40314
chr8125723579125723813E081-40071
chr8125724309125724384E081-39500
chr8125724549125724948E081-38936
chr8125728249125728300E081-35584
chr8125728428125728478E081-35406
chr8125728541125728669E081-35215
chr8125728709125728897E081-34987
chr8125730238125730295E081-33589
chr8125730426125730500E081-33384
chr8125730574125731065E081-32819
chr8125731660125731720E081-32164
chr8125733979125734228E081-29656
chr8125734333125734420E081-29464
chr8125734423125734489E081-29395
chr8125734496125734612E081-29272
chr8125734772125734885E081-28999
chr8125735140125735194E081-28690
chr8125735262125735374E081-28510
chr8125735510125735560E081-28324
chr8125735792125735842E081-28042
chr8125735895125735995E081-27889
chr8125736574125736729E081-27155
chr8125741759125741821E081-22063
chr8125808336125808727E08144452
chr8125808757125808801E08144873
chr8125808855125808908E08144971
chr8125808918125809000E08145034
chr8125809094125809134E08145210
chr8125809384125809434E08145500
chr8125718115125718195E082-45689
chr8125718373125718494E082-45390
chr8125718638125718893E082-44991
chr8125719005125719081E082-44803
chr8125719185125719412E082-44472
chr8125720194125720278E082-43606
chr8125720438125720983E082-42901
chr8125721238125722674E082-41210
chr8125722795125723164E082-40720
chr8125723179125723570E082-40314
chr8125723579125723813E082-40071
chr8125724309125724384E082-39500
chr8125724549125724948E082-38936
chr8125730238125730295E082-33589
chr8125730426125730500E082-33384
chr8125733979125734228E082-29656
chr8125734333125734420E082-29464
chr8125734423125734489E082-29395
chr8125734496125734612E082-29272
chr8125734772125734885E082-28999
chr8125735140125735194E082-28690
chr8125735792125735842E082-28042
chr8125735895125735995E082-27889
chr8125741759125741821E082-22063
chr8125741868125742266E082-21618
chr8125742327125742406E082-21478
chr8125742411125742614E082-21270
chr8125808757125808801E08244873
chr8125808855125808908E08244971
chr8125808918125809000E08245034
chr8125809094125809134E08245210










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr8125738236125741684E067-22200
chr8125738122125738182E068-25702
chr8125738236125741684E068-22200
chr8125737999125738101E069-25783
chr8125738122125738182E069-25702
chr8125738236125741684E069-22200
chr8125737999125738101E070-25783
chr8125738122125738182E070-25702
chr8125738236125741684E070-22200
chr8125738236125741684E071-22200
chr8125738236125741684E072-22200
chr8125737999125738101E073-25783
chr8125738122125738182E073-25702
chr8125738236125741684E073-22200
chr8125737999125738101E074-25783
chr8125738122125738182E074-25702
chr8125738236125741684E074-22200
chr8125737999125738101E081-25783
chr8125738122125738182E081-25702
chr8125738236125741684E081-22200
chr8125737999125738101E082-25783
chr8125738122125738182E082-25702
chr8125738236125741684E082-22200