| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 5 | NC_000005.10:g.13834597T>C |
| GRCh38.p7 chr 5 | NC_000005.10:g.13834597T>G |
| GRCh37.p13 chr 5 | NC_000005.9:g.13834706T>C |
| GRCh37.p13 chr 5 | NC_000005.9:g.13834706T>G |
| DNAH5 RefSeqGene | NG_013081.1:g.114884A>G |
| DNAH5 RefSeqGene | NG_013081.1:g.114884A>C |
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| DNAH5 transcript | NM_001369.2:c. | N/A | Intron Variant |
| DNAH5 transcript variant X1 | XM_005248262.3:c. | N/A | Intron Variant |
| DNAH5 transcript variant X2 | XM_017009177.1:c. | N/A | Intron Variant |
| DNAH5 transcript variant X4 | XM_017009178.1:c. | N/A | Intron Variant |
| DNAH5 transcript variant X4 | XM_017009179.1:c. | N/A | Intron Variant |
| DNAH5 transcript variant X6 | XM_017009180.1:c. | N/A | Intron Variant |
| DNAH5 transcript variant X8 | XM_017009181.1:c. | N/A | Intron Variant |
| DNAH5 transcript variant X9 | XM_017009182.1:c. | N/A | Intron Variant |
| DNAH5 transcript variant X10 | XM_017009183.1:c. | N/A | Intron Variant |
| DNAH5 transcript variant X11 | XM_017009184.1:c. | N/A | Intron Variant |
| DNAH5 transcript variant X12 | XM_017009185.1:c. | N/A | Intron Variant |
| DNAH5 transcript variant X15 | XM_017009186.1:c. | N/A | Intron Variant |
| DNAH5 transcript variant X16 | XM_017009187.1:c. | N/A | Intron Variant |
| DNAH5 transcript variant X17 | XM_017009188.1:c. | N/A | 5 Prime UTR Variant |
| DNAH5 transcript variant X13 | XR_001742034.1:n. | N/A | Intron Variant |
| DNAH5 transcript variant X14 | XR_001742035.1:n. | N/A | Intron Variant |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | T=0.900 | G=0.100 |
| 1000Genomes | American | Sub | 694 | T=0.790 | G=0.210 |
| 1000Genomes | East Asian | Sub | 1008 | T=0.900 | G=0.100 |
| 1000Genomes | Europe | Sub | 1006 | T=0.844 | G=0.156 |
| 1000Genomes | Global | Study-wide | 5008 | T=0.865 | G=0.135 |
| 1000Genomes | South Asian | Sub | 978 | T=0.860 | G=0.140 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | T=0.848 | G=0.152 |
| The Genome Aggregation Database | African | Sub | 8726 | T=0.871 | G=0.129 |
| The Genome Aggregation Database | American | Sub | 836 | T=0.810 | G=0.190 |
| The Genome Aggregation Database | East Asian | Sub | 1622 | T=0.883 | G=0.117 |
| The Genome Aggregation Database | Europe | Sub | 18474 | T=0.847 | G=0.152 |
| The Genome Aggregation Database | Global | Study-wide | 29960 | T=0.854 | G=0.145 |
| The Genome Aggregation Database | Other | Sub | 302 | T=0.760 | G=0.240 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | T=0.845 | G=0.155 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs16902820 | 0.000966 | alcohol dependence | 21314694 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr5 | 79782546 | 79782732 | E067 | -5103 |
| chr5 | 79782794 | 79783053 | E067 | -4782 |
| chr5 | 79782546 | 79782732 | E068 | -5103 |
| chr5 | 79782794 | 79783053 | E068 | -4782 |
| chr5 | 79806033 | 79806084 | E068 | 18198 |
| chr5 | 79782546 | 79782732 | E069 | -5103 |
| chr5 | 79782794 | 79783053 | E069 | -4782 |
| chr5 | 79738724 | 79738788 | E071 | -49047 |
| chr5 | 79805665 | 79805796 | E071 | 17830 |
| chr5 | 79806033 | 79806084 | E071 | 18198 |
| chr5 | 79782546 | 79782732 | E072 | -5103 |
| chr5 | 79782794 | 79783053 | E072 | -4782 |
| chr5 | 79782794 | 79783053 | E073 | -4782 |
| chr5 | 79806033 | 79806084 | E074 | 18198 |
| Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
|---|---|---|---|---|
| chr5 | 79783460 | 79784619 | E067 | -3216 |
| chr5 | 79784660 | 79784732 | E067 | -3103 |
| chr5 | 79783235 | 79783302 | E068 | -4533 |
| chr5 | 79783460 | 79784619 | E068 | -3216 |
| chr5 | 79784660 | 79784732 | E068 | -3103 |
| chr5 | 79783235 | 79783302 | E069 | -4533 |
| chr5 | 79783460 | 79784619 | E069 | -3216 |
| chr5 | 79784660 | 79784732 | E069 | -3103 |
| chr5 | 79783235 | 79783302 | E070 | -4533 |
| chr5 | 79783460 | 79784619 | E070 | -3216 |
| chr5 | 79784660 | 79784732 | E070 | -3103 |
| chr5 | 79783235 | 79783302 | E071 | -4533 |
| chr5 | 79783460 | 79784619 | E071 | -3216 |
| chr5 | 79784660 | 79784732 | E071 | -3103 |
| chr5 | 79783460 | 79784619 | E072 | -3216 |
| chr5 | 79784660 | 79784732 | E072 | -3103 |
| chr5 | 79783235 | 79783302 | E073 | -4533 |
| chr5 | 79783460 | 79784619 | E073 | -3216 |
| chr5 | 79784660 | 79784732 | E073 | -3103 |
| chr5 | 79783460 | 79784619 | E074 | -3216 |
| chr5 | 79784660 | 79784732 | E074 | -3103 |
| chr5 | 79783460 | 79784619 | E081 | -3216 |
| chr5 | 79783235 | 79783302 | E082 | -4533 |
| chr5 | 79783460 | 79784619 | E082 | -3216 |
| chr5 | 79784660 | 79784732 | E082 | -3103 |